Single-character insertion-deletion model preserves long indels in ancestral sequence reconstruction.

Autor: Jowkar G; Institute of Biology, University of Neuchâtel, Rue Emile-Argand 11, 2000, Neuchâtel, Neuchâtel, Switzerland. xjok@zhaw.ch.; Swiss Institute of Bioinformatics, Quartier Sorge - Batiment Amphipôle, 1015, Lausanne, Vaud, Switzerland. xjok@zhaw.ch.; Institute of Computational Life Sciences, School of Life Sciences and Facility Management, Zurich University of Applied Sciences (ZHAW), Schloss, 8820, Wädenswil, Zürich, Switzerland. xjok@zhaw.ch., Pečerska J; Swiss Institute of Bioinformatics, Quartier Sorge - Batiment Amphipôle, 1015, Lausanne, Vaud, Switzerland.; Institute of Computational Life Sciences, School of Life Sciences and Facility Management, Zurich University of Applied Sciences (ZHAW), Schloss, 8820, Wädenswil, Zürich, Switzerland., Gil M; Swiss Institute of Bioinformatics, Quartier Sorge - Batiment Amphipôle, 1015, Lausanne, Vaud, Switzerland.; Institute of Computational Life Sciences, School of Life Sciences and Facility Management, Zurich University of Applied Sciences (ZHAW), Schloss, 8820, Wädenswil, Zürich, Switzerland., Anisimova M; Swiss Institute of Bioinformatics, Quartier Sorge - Batiment Amphipôle, 1015, Lausanne, Vaud, Switzerland. maria.anisimova@zhaw.ch.; Institute of Computational Life Sciences, School of Life Sciences and Facility Management, Zurich University of Applied Sciences (ZHAW), Schloss, 8820, Wädenswil, Zürich, Switzerland. maria.anisimova@zhaw.ch.

Publikováno v: BMC bioinformatics [BMC Bioinformatics] 2024 Dec 02; Vol. 25 (1), pp. 370. Date of Electronic Publication: 2024 Dec 02.

Applications of ancestral sequence reconstruction for understanding the evolution of plant specialized metabolism.

Autor: Barkman, Todd J.

Publikováno v: Philosophical Transactions of the Royal Society B: Biological Sciences; 11/18/2024, Vol. 379 Issue 1914, p1-9, 9p

Please Mind the Gap: Indel-Aware Parsimony for Fast and Accurate Ancestral Sequence Reconstruction and Multiple Sequence Alignment Including Long Indels.

Autor: Iglhaut, Clara, Pečerska, Jūlija, Gil, Manuel, Anisimova, Maria

Publikováno v: Molecular Biology & Evolution; Jul2024, Vol. 41 Issue 7, p1-19, 19p

Machine learning prediction and tau-based screening identifies potential Alzheimer's disease genes relevant to immunity.

Autor: Binder, Jessica¹ (AUTHOR), Ursu, Oleg^1,2 (AUTHOR), Bologa, Cristian¹ (AUTHOR), Jiang, Shanya³ (AUTHOR), Maphis, Nicole³ (AUTHOR), Dadras, Somayeh³ (AUTHOR), Chisholm, Devon³ (AUTHOR), Weick, Jason⁴ (AUTHOR), Myers, Orrin¹ (AUTHOR), Kumar, Praveen¹ (AUTHOR), Yang, Jeremy J.¹ (AUTHOR), Bhaskar, Kiran^3,5 (AUTHOR) kbhaskar@salud.unm.edu, Oprea, Tudor I.^1,6,7,8 (AUTHOR) toprea@salud.unm.edu

Publikováno v: Communications Biology. 2/11/2022, Vol. 5 Issue 1, p1-15. 15p.

Recent advances in network-based methods for disease gene prediction.

Autor: Ata, Sezin Kircali¹ (AUTHOR), Wu, Min² (AUTHOR), Fang, Yuan³ (AUTHOR), Ou-Yang, Le⁴ (AUTHOR), Kwoh, Chee Keong⁵ (AUTHOR), Li, Xiao-Li⁶ (AUTHOR) xlli@i2r.a-star.edu.sg

Publikováno v: Briefings in Bioinformatics. Jul2021, Vol. 22 Issue 4, p1-15. 15p.