Zobrazeno 1 - 6
of 6
pro vyhledávání: '"Josiah Seaman"'
Autor:
Josiah Seaman, Richard J. A. Buggs
Publikováno v:
Frontiers in Genetics, Vol 11 (2020)
Researchers seldom look at naked genome assemblies: instead the attributes of DNA sequences are mediated through statistics, annotations and high level summaries. Here we present software that visualizes the bare sequences of whole genome assemblies
Externí odkaz:
https://doaj.org/article/61b168365a1d4ff99ecb33ea809024c4
Autor:
Michael R. Crusoe, Hussien F. Alameldin, Sherine Awad, Elmar Boucher, Adam Caldwell, Reed Cartwright, Amanda Charbonneau, Bede Constantinides, Greg Edvenson, Scott Fay, Jacob Fenton, Thomas Fenzl, Jordan Fish, Leonor Garcia-Gutierrez, Phillip Garland, Jonathan Gluck, Iván González, Sarah Guermond, Jiarong Guo, Aditi Gupta, Joshua R. Herr, Adina Howe, Alex Hyer, Andreas Härpfer, Luiz Irber, Rhys Kidd, David Lin, Justin Lippi, Tamer Mansour, Pamela McA'Nulty, Eric McDonald, Jessica Mizzi, Kevin D. Murray, Joshua R. Nahum, Kaben Nanlohy, Alexander Johan Nederbragt, Humberto Ortiz-Zuazaga, Jeramia Ory, Jason Pell, Charles Pepe-Ranney, Zachary N. Russ, Erich Schwarz, Camille Scott, Josiah Seaman, Scott Sievert, Jared Simpson, Connor T. Skennerton, James Spencer, Ramakrishnan Srinivasan, Daniel Standage, James A. Stapleton, Susan R. Steinman, Joe Stein, Benjamin Taylor, Will Trimble, Heather L. Wiencko, Michael Wright, Brian Wyss, Qingpeng Zhang, en zyme, C. Titus Brown
Publikováno v:
F1000Research, Vol 4 (2015)
The khmer package is a freely available software library for working efficiently with fixed length DNA words, or k-mers. khmer provides implementations of a probabilistic k-mer counting data structure, a compressible De Bruijn graph representation, D
Externí odkaz:
https://doaj.org/article/dc774924b98d40d0bd7efc6c2c5b346c
Autor:
Margaret Staton, Jennifer Koch, Josiah Seaman, John E. Carlson, Matt Huff, Kim C. Steiner, Endymion D. Cooper, Teodora Best, Tetyana Zhebentyayeva, Wu Di, Laura J. Kelly, C.D. Nelson, Jeanne Romero Severson, Nurul Faridi, Richard J. A. Buggs
Publikováno v:
Molecular ecology resources. 22(4)
Green ash (Fraxinus pennsylvanica) is the most widely distributed ash tree in North America. Once common, it has experienced high mortality from the non-native invasive emerald ash borer (EAB; Agrilus planipennis). A small percentage of native green
Autor:
Matthew Huff, Josiah Seaman, Di Wu, Tetyana Zhebentyayeva, Laura Kelly, Nurul Faridi, Charles Dana Nelson, Endymion Cooper, Enrico Bonello, Teodora Best, Kim Steiner, Jennifer Koch, Jeanne Romero-Severson, John E. Carlson, Richard Buggs, Margaret Staton
Following the recent assembly of the chromosome-level Fraxinus pennsylvanica genome, we used the assembly to construct reference-guided assemblies of 27 previously sequenced Fraxinus taxa, including Fraxinus excelsior. Thus we present a significant s
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6e6ddd9371bfdb9d45763ecb5f980a3e
Autor:
Richard J. A. Buggs, Josiah Seaman
Publikováno v:
Frontiers in Genetics
Frontiers in Genetics, Vol 11 (2020)
Frontiers in Genetics, Vol 11 (2020)
Researchers seldom look at naked genome assemblies: instead the attributes of DNA sequences are mediated through statistics, annotations and high level summaries. Here we present software that visualizes the bare sequences of whole genome assemblies
Autor:
Alexander J. Nederbragt, Susan R. Steinman, Sherine Awad, Scott Fay, Jordan A. Fish, Kaben G. Nanlohy, Camille Scott, C. Titus Brown, Hussien F. Alameldin, Jiarong Guo, James S. Spencer, Heather L. Wiencko, Ramakrishnan Srinivasan, Reed A. Cartwright, Benjamin R Taylor, Elmar Boucher, Phillip Garland, Pamela McA'Nulty, Joshua R. Herr, Bede Constantinides, Daniel S. Standage, Luiz Irber, Michael R. Crusoe, Joshua R. Nahum, Justin Lippi, Qingpeng Zhang, Adam Caldwell, Adina Howe, Jared T. Simpson, Thomas Fenzl, Erich M. Schwarz, Greg Edvenson, Alex Hyer, Charles Pepe-Ranney, Jason Pell, Eric McDonald, Amanda Charbonneau, Aditi Gupta, Michael Wright, Rhys Kidd, Jessica E. Mizzi, Jeramia Ory, Zachary N. Russ, Humberto Ortiz-Zuazaga, Leonor Garcia-Gutierrez, Josiah Seaman, Scott Sievert, Brian Wyss, Ivan Gonzalez, Connor T. Skennerton, Joe Stein, James A. Stapleton, Jacob Fenton, en zyme, Kevin D Murray, Andreas Härpfer, David Lin, Tamer A. Mansour, Will Trimble, Sarah Guermond, Jonathan Gluck
Publikováno v:
F1000Research
The khmer package is a freely available software library for working efficiently with fixed length DNA words, or k-mers. khmer provides implementations of a probabilistic k-mer counting data structure, a compressible De Bruijn graph representation, D