Zobrazeno 1 - 10
of 34
pro vyhledávání: '"Joseph W Foley"'
Autor:
Emilia A H Vanni, Joseph W Foley, Andrew J Davison, Marvin Sommer, Dongmei Liu, Phillip Sung, Jennifer Moffat, Leigh Zerboni, Ann M Arvin
Publikováno v:
PLoS Pathogens, Vol 16, Iss 12, p e1009166 (2020)
Herpes simplex virus 1 (HSV-1) infects skin and mucosal epithelial cells and then travels along axons to establish latency in the neurones of sensory ganglia. Although viral gene expression is restricted during latency, the latency-associated transcr
Externí odkaz:
https://doaj.org/article/4837bd804ca54bc4b614cfe9b39aa1fc
Autor:
Athma A Pai, Golshid Baharian, Ariane Pagé Sabourin, Jessica F Brinkworth, Yohann Nédélec, Joseph W Foley, Jean-Christophe Grenier, Katherine J Siddle, Anne Dumaine, Vania Yotova, Zachary P Johnson, Robert E Lanford, Christopher B Burge, Luis B Barreiro
Publikováno v:
PLoS Genetics, Vol 12, Iss 9, p e1006338 (2016)
The contribution of pre-mRNA processing mechanisms to the regulation of immune responses remains poorly studied despite emerging examples of their role as regulators of immune defenses. We sought to investigate the role of mRNA processing in the cell
Externí odkaz:
https://doaj.org/article/3cffb7e4abef48b4bb26f9b2dd3b0a57
Autor:
Andrew H Beck, Ziming Weng, Daniela M Witten, Shirley Zhu, Joseph W Foley, Phil Lacroute, Cheryl L Smith, Robert Tibshirani, Matt van de Rijn, Arend Sidow, Robert B West
Publikováno v:
PLoS ONE, Vol 5, Iss 1, p e8768 (2010)
Gene expression microarrays are the most widely used technique for genome-wide expression profiling. However, microarrays do not perform well on formalin fixed paraffin embedded tissue (FFPET). Consequently, microarrays cannot be effectively utilized
Externí odkaz:
https://doaj.org/article/4b188761151c4748a7d11746f8c8cdb2
Current methods for profiling DNA methylation require costly reagents, sequencing, or labor time. We introduce FML-seq, a sequencing library protocol that greatly reduces all these costs. Relative to other techniques tested on the same human cell lin
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::fb7be6494fb24fb41fb42b6dbe4f6dc9
https://doi.org/10.1101/2023.01.13.523849
https://doi.org/10.1101/2023.01.13.523849
Autor:
Joshua K. Tay, Chunfang Zhu, June Ho Shin, Shirley X. Zhu, Sushama Varma, Joseph W. Foley, Sujay Vennam, Yim Ling Yip, Chuan Keng Goh, De Yun Wang, Kwok Seng Loh, Sai Wah Tsao, Quynh-Thu Le, John B. Sunwoo, Robert B. West
Publikováno v:
Science Advances. 8
Nasopharyngeal cancer (NPC) is an Epstein-Barr virus (EBV)–positive epithelial malignancy with an extensive inflammatory infiltrate. Traditional RNA-sequencing techniques uncovered only microenvironment signatures, while the gene expression of the
Autor:
Sujay Vennam, Sushama Varma, Parag Mallick, Christina Curtis, Peipei Lu, Shirley Zhu, Chunfang Zhu, Joseph W. Foley, Jens Rittscher, Robert B. West, Katherine McNamara, Hamid Fehri, Arunima Srivastava, Korsuk Sirinukunwattana
Publikováno v:
Breast Cancer Research, Vol 23, Iss 1, Pp 1-15 (2021)
Breast Cancer Research : BCR
Breast Cancer Research : BCR
Background The acquisition of oncogenic drivers is a critical feature of cancer progression. For some carcinomas, it is clear that certain genetic drivers occur early in neoplasia and others late. Why these drivers are selected and how these changes
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::907b73785784bddd6d5db97ea245fd91
https://ora.ox.ac.uk/objects/uuid:b8582f56-7946-44a8-bfe7-00d76c5faf1d
https://ora.ox.ac.uk/objects/uuid:b8582f56-7946-44a8-bfe7-00d76c5faf1d
Autor:
Shirley Zhu, Chunfang Zhu, Joseph W. Foley, Philippe Jolivet, Peipei Lu, Robert B. West, Michael J. Meaney
Publikováno v:
Genome Research. 29:1816-1825
RNA sequencing (RNA-seq) is a sensitive and accurate method for quantifying gene expression. Small samples or those whose RNA is degraded, such as formalin-fixed paraffin-embedded (FFPE) tissue, remain challenging to study with nonspecialized RNA-seq
Autor:
Phillip Sung, Ann M. Arvin, Leigh Zerboni, Dongmei Liu, Andrew J. Davison, Emilia A. H. Vanni, Jennifer F. Moffat, Marvin Sommer, Joseph W. Foley
Publikováno v:
PLoS Pathogens, Vol 16, Iss 12, p e1009166 (2020)
PLoS Pathogens
PLoS Pathogens
Herpes simplex virus 1 (HSV-1) infects skin and mucosal epithelial cells and then travels along axons to establish latency in the neurones of sensory ganglia. Although viral gene expression is restricted during latency, the latency-associated transcr
Autor:
Philippe Jolivet, Joseph W. Foley
This protocol describes the preparation of stocks and buffers for inexpensive, convenient, and scalable DNA and RNA purification from aqueous solutions by solid-phase reversible immobilization (SPRI) on carboxylated paramagnetic beads. It also descri
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ca4d4940d7819665850c581b259d93b7
https://doi.org/10.17504/protocols.io.bnz4mf8w
https://doi.org/10.17504/protocols.io.bnz4mf8w
Autor:
Chunfang Zhu, Philippe Jolivet, Michael J. Meaney, Peipei Lu, Joseph W. Foley, Shirley Zhu, Robert B. West
RNA sequencing (RNA-seq) is a sensitive and accurate method for quantifying gene expression. Small samples or those whose RNA is degraded, such as formalin-fixed, paraffin-embedded (FFPE) tissue, remain challenging to study with nonspecialized RNA-se
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::310bc1cce10ae3ceb19897f378edb1e3