Zobrazeno 1 - 10
of 18
pro vyhledávání: '"Joseph D Baugher"'
Publikováno v:
PLoS ONE, Vol 11, Iss 11, p e0166162 (2016)
The adoption of whole-genome sequencing within the public health realm for molecular characterization of bacterial pathogens has been followed by an increased emphasis on real-time detection of emerging outbreaks (e.g., food-borne Salmonellosis). In
Externí odkaz:
https://doaj.org/article/059b7dcaabce4f2686d04df5f0f6dcbe
Publikováno v:
PLoS ONE, Vol 7, Iss 11, p e49575 (2012)
Correct annotation of the genetic relationships between samples is essential for population genomic studies, which could be biased by errors or omissions. To this end, we used identity-by-state (IBS) and identity-by-descent (IBD) methods to assess ge
Externí odkaz:
https://doaj.org/article/b6bb7aea610949eea91873616c3db9b4
Autor:
Eric L Stevens, Greg Heckenberg, Elisha D O Roberson, Joseph D Baugher, Thomas J Downey, Jonathan Pevsner
Publikováno v:
PLoS Genetics, Vol 7, Iss 9, p e1002287 (2011)
It is an assumption of large, population-based datasets that samples are annotated accurately whether they correspond to known relationships or unrelated individuals. These annotations are key for a broad range of genetics applications. While many me
Externí odkaz:
https://doaj.org/article/da937ee947e642ca8859c0eb29cb325c
Autor:
Guojie Cao, Yan Luo, Marc W. Allard, Jean Guard, Maria Hoffmann, Sherrill Davison, Rebecca L. Bell, Jie Zheng, Kuan Yao, Eric W. Brown, Guodong Zhang, Joseph D. Baugher, Nathan Likens
Publikováno v:
Genomics. 112:528-544
A total of 91 draft genome sequences were used to analyze isolates of Salmonella enterica serovar Enteritidis obtained from feral mice caught on poultry farms in Pennsylvania. One objective was to find mutations disrupting open reading frames (ORFs)
Autor:
Deborah Sheehan, Eija Trees, Ruth Timme, Ashley Sabol, Errol Strain, Maria Hoffmann, Jennifer K. Adams, Maria Balkey, Rebecca L. Lindsey, Hugh Rand, Joseph D. Baugher, Patricia C. Lafon, Darlene Wagner, Heather A. Carleton
Publikováno v:
Scientific Data
Scientific Data, Vol 7, Iss 1, Pp 1-5 (2020)
Scientific Data, Vol 7, Iss 1, Pp 1-5 (2020)
The US PulseNet and GenomeTrakr laboratory networks work together within the Genomics for Food Safety (Gen-FS) consortium to collect and analyze genomic data for foodborne pathogen surveillance (species include Salmonella enterica, Listeria monocytog
Autor:
Sandra M. Tallent, Ruth Timme, Maria Sanchez Leon, Steven Davis, Marc W. Allard, Joseph D. Baugher, Narjol Gonzalez-Escalona, Errol Strain, Eric W. Brown, Hugh Rand
Publikováno v:
Journal of clinical microbiology. 57(5)
Foodborne pathogen surveillance in the United States is transitioning from strain identification using restriction digest technology (pulsed-field gel electrophoresis [PFGE]) to shotgun sequencing of the entire genome (whole-genome sequencing [WGS]).
Autor:
Joseph D. Baugher
Publikováno v:
Journal of open source software
Autor:
Ruth Timme, Marc W. Allard, Maria Hoffmann, Errol Strain, Hugh Rand, Dwayne Roberson, Maria Sanchez Leon, Joseph D. Baugher
Publikováno v:
Microbial Genomics
Pathogen monitoring is becoming more precise as sequencing technologies become more affordable and accessible worldwide. This transition is especially apparent in the field of food safety, which has demonstrated how whole-genome sequencing (WGS) can
Autor:
Marc W. Allard, Rebecca L. Bell, Maria Hoffmann, Guodong Zhang, Joseph D. Baugher, Jean Guard, Jie Zheng, Guojie Cao, Kuan Yao, Yan Luo, Sherrill Davison, Eric W. Brown
Salmonella entericaserovar Enteritidis (SE), the most commonly reported serovar of human salmonellosis, has been frequently associated with poultry farms, eggs and egg products. Mice are known vectors of SE contamination in these facilities. The obje
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::374dec2eac3ca6d3fa5f5d1d5eaeda9a
Autor:
Yan Luo, Arthur W. Pightling, Errol Strain, Hugh Rand, Joseph D. Baugher, James B. Pettengill
Publikováno v:
Frontiers in Microbiology
Frontiers in Microbiology, Vol 9 (2018)
Frontiers in Microbiology, Vol 9 (2018)
Whole-genome sequence (WGS) analysis has revolutionized the food safety industry by enabling high-resolution typing of foodborne bacteria. Higher resolving power allows investigators to identify origins of contamination during illness outbreaks and r