Ensembl 2023

Autor: Fergal J Martin, M Ridwan Amode, Alisha Aneja, Olanrewaju Austine-Orimoloye, Andrey G Azov, If Barnes, Arne Becker, Ruth Bennett, Andrew Berry, Jyothish Bhai, Simarpreet Kaur Bhurji, Alexandra Bignell, Sanjay Boddu, Paulo R Branco Lins, Lucy Brooks, Shashank Budhanuru Ramaraju, Mehrnaz Charkhchi, Alexander Cockburn, Luca Da Rin Fiorretto, Claire Davidson, Kamalkumar Dodiya, Sarah Donaldson, Bilal El Houdaigui, Tamara El Naboulsi, Reham Fatima, Carlos Garcia Giron, Thiago Genez, Gurpreet S Ghattaoraya, Jose Gonzalez Martinez, Cristi Guijarro, Matthew Hardy, Zoe Hollis, Thibaut Hourlier, Toby Hunt, Mike Kay, Vinay Kaykala, Tuan Le, Diana Lemos, Diego Marques-Coelho, José Carlos Marugán, Gabriela Alejandra Merino, Louisse Paola Mirabueno, Aleena Mushtaq, Syed Nakib Hossain, Denye N Ogeh, Manoj Pandian Sakthivel, Anne Parker, Malcolm Perry, Ivana Piližota, Irina Prosovetskaia, José G Pérez-Silva, Ahamed Imran Abdul Salam, Nuno Saraiva-Agostinho, Helen Schuilenburg, Dan Sheppard, Swati Sinha, Botond Sipos, William Stark, Emily Steed, Ranjit Sukumaran, Dulika Sumathipala, Marie-Marthe Suner, Likhitha Surapaneni, Kyösti Sutinen, Michal Szpak, Francesca Floriana Tricomi, David Urbina-Gómez, Andres Veidenberg, Thomas A Walsh, Brandon Walts, Elizabeth Wass, Natalie Willhoft, Jamie Allen, Jorge Alvarez-Jarreta, Marc Chakiachvili, Bethany Flint, Stefano Giorgetti, Leanne Haggerty, Garth R Ilsley, Jane E Loveland, Benjamin Moore, Jonathan M Mudge, John Tate, David Thybert, Stephen J Trevanion, Andrea Winterbottom, Adam Frankish, Sarah E Hunt, Magali Ruffier, Fiona Cunningham, Sarah Dyer, Robert D Finn, Kevin L Howe, Peter W Harrison, Andrew D Yates, Paul Flicek

Ensembl (https://www.ensembl.org) has produced high-quality genomic resources for vertebrates and model organisms for more than twenty years. During that time, our resources, services and tools have continually evolved in line with both the publicly

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______2659::cd11a4cab84aff8df49f51a5acdcc704
https://zenodo.org/record/7705404

Ensembl 2023

Autor: Fergal J Martin, M Ridwan Amode, Alisha Aneja, Olanrewaju Austine-Orimoloye, Andrey G Azov, If Barnes, Arne Becker, Ruth Bennett, Andrew Berry, Jyothish Bhai, Simarpreet Kaur Bhurji, Alexandra Bignell, Sanjay Boddu, Paulo R Branco Lins, Lucy Brooks, Shashank Budhanuru Ramaraju, Mehrnaz Charkhchi, Alexander Cockburn, Luca Da Rin Fiorretto, Claire Davidson, Kamalkumar Dodiya, Sarah Donaldson, Bilal El Houdaigui, Tamara El Naboulsi, Reham Fatima, Carlos Garcia Giron, Thiago Genez, Gurpreet S Ghattaoraya, Jose Gonzalez Martinez, Cristi Guijarro, Matthew Hardy, Zoe Hollis, Thibaut Hourlier, Toby Hunt, Mike Kay, Vinay Kaykala, Tuan Le, Diana Lemos, Diego Marques-Coelho, José Carlos Marugán, Gabriela Alejandra Merino, Louisse Paola Mirabueno, Aleena Mushtaq, Syed Nakib Hossain, Denye N Ogeh, Manoj Pandian Sakthivel, Anne Parker, Malcolm Perry, Ivana Piližota, Irina Prosovetskaia, José G Pérez-Silva, Ahamed Imran Abdul Salam, Nuno Saraiva-Agostinho, Helen Schuilenburg, Dan Sheppard, Swati Sinha, Botond Sipos, William Stark, Emily Steed, Ranjit Sukumaran, Dulika Sumathipala, Marie-Marthe Suner, Likhitha Surapaneni, Kyösti Sutinen, Michal Szpak, Francesca Floriana Tricomi, David Urbina-Gómez, Andres Veidenberg, Thomas A Walsh, Brandon Walts, Elizabeth Wass, Natalie Willhoft, Jamie Allen, Jorge Alvarez-Jarreta, Marc Chakiachvili, Bethany Flint, Stefano Giorgetti, Leanne Haggerty, Garth R Ilsley, Jane E Loveland, Benjamin Moore, Jonathan M Mudge, John Tate, David Thybert, Stephen J Trevanion, Andrea Winterbottom, Adam Frankish, Sarah E Hunt, Magali Ruffier, Fiona Cunningham, Sarah Dyer, Robert D Finn, Kevin L Howe, Peter W Harrison, Andrew D Yates, Paul Flicek

Publikováno v: Nucleic Acids Research

Ensembl (https://www.ensembl.org) has produced high-quality genomic resources for vertebrates and model organisms for more than twenty years. During that time, our resources, services and tools have continually evolved in line with both the publicly

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8116adc6c4e2430fccec702b452d81a6

Giant tortoise genomes provide insights into longevity and age-related disease

Autor: Dido Carrero, Stephen J. Gaughran, Tomas Marques-Bonet, Isaac Tamargo-Gómez, Scott Glaberman, Miguel G. Álvarez, Kevin P. White, Ylenia Chiari, Zi-Feng Jiang, Adalgisa Caccone, Danielle L. Edwards, Olaya Santiago-Fernández, Joshua M. Miller, Víctor Quesada, María Pascual-Torner, José G. Pérez-Silva, David Roiz-Valle, James P. Gibbs, Gabriel Bretones, Javier R. Arango, Claudio Ciofi, Diana Campos-Iglesias, Carlos López-Otín, Sandra Freitas-Rodríguez, Washington Tapia, Luciano B. Beheregaray, Benjamin R. Evans, Nikos Poulakakis, Miguel Araujo-Voces, Michael A. Russello, Maud C. Quinzin, Pablo Mayoral, Lukas F. K. Kuderna, Danny Rueda, Ryan C. Garrick

Publikováno v: Nature ecology & evolution
Digital.CSIC. Repositorio Institucional del CSIC
instname
Nature ecology & evolution, vol 3, iss 1
Scopus
Dipòsit Digital de Documents de la UAB
Universitat Autònoma de Barcelona
RUO. Repositorio Institucional de la Universidad de Oviedo
Nature Ecology & Evolution
Recercat. Dipósit de la Recerca de Catalunya
Quesada, V; Freitas-Rodríguez, S; Miller, J; Pérez-Silva, JG; Jiang, ZF; Tapia, W; et al.(2019). Giant tortoise genomes provide insights into longevity and age-related disease. Nature Ecology and Evolution, 3(1), 87-95. doi: 10.1038/s41559-018-0733-x. UC Merced: Retrieved from: http://www.escholarship.org/uc/item/8tb9j1g8

Giant tortoises are among the longest-lived vertebrate animals and, as such, provide an excellent model to study traits like longevity and age-related diseases. However, genomic and molecular evolutionary information on giant tortoises is scarce. Her

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6c056bae7b4b4abaaedc751f9cdff787
http://hdl.handle.net/10261/207258

nVenn: generalized, quasi-proportional Venn and Euler diagrams

Autor: José G. Pérez-Silva, Miguel Araujo-Voces, Víctor Quesada

Publikováno v: Bioinformatics (Oxford, England). 34(13)

Motivation Venn and Euler diagrams are extensively used for the visualization of relationships between experiments and datasets. However, representing more than three datasets while keeping the proportions of each region is still not feasible with ex

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::aee22aaf58b7052cd05487839a22a6c8
https://pubmed.ncbi.nlm.nih.gov/29949954

The Novel Evolution of the Sperm Whale Genome

Autor: Wesley C Warren, Lukas Kuderna, Alana Alexander, Julian Catchen, José G Pérez-Silva, Carlos López-Otín, Víctor Quesada, Patrick Minx, Chad Tomlinson, Michael J Montague, Fabiana H G Farias, Ronald B Walter, Tomas Marques-Bonet, Travis Glenn, Troy J Kieran, Sandra S Wise, John Pierce Wise, Robert M Waterhouse

Publikováno v: Genome Biology and Evolution
WOS:000423460600004
RUO. Repositorio Institucional de la Universidad de Oviedo
instname
Genome Biology and Evolution, vol. 9, no. 12, pp. 3260-3264
Recercat. Dipósit de la Recerca de Catalunya

This work was supported by the National Institute of Health grant 2R24OD011198-04A1 (W.C.W., PI); National Institute of Environmental Health Sciences [ES016893 (J.W. Sr, PI)]; Army Research Office [W911NF-09-1-0296 (J.W. Sr, PI)]; Swiss National Scie

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7b42304897779bc3fef56be18a7624ae
https://pubmed.ncbi.nlm.nih.gov/29718208