Zobrazeno 1 - 10
of 18
pro vyhledávání: '"Jorge C Navarro-Muñoz"'
Autor:
Dongmei Zhou, Xiaoyu Wang, Wilfred Mabeche Anjago, Jingjing Li, Weishan Li, Mengnan Li, Min Jiu, Qimeng Zhang, Jinfeng Zhang, Sheng Deng, Yonghao Ye, Jorge C. Navarro-Muñoz, Paul Daly, Lihui Wei
Publikováno v:
Biological Control, Vol 188, Iss , Pp 105411- (2024)
Biopesticides are an attractive biotechnological alternative to conventional pesticides for soil-borne plant diseases. A screening strategy with over 100 actinomycetes bacteria isolated from diverse rhizosphere soils uncovered the Streptomyces rochei
Externí odkaz:
https://doaj.org/article/5fae025d5254484c896735e2f4e4cec1
Autor:
Olga V. Mosunova, Jorge C. Navarro-Muñoz, Diksha Haksar, Jacq van Neer, Jelmer Hoeksma, Jeroen den Hertog, Jérôme Collemare
Publikováno v:
mBio, Vol 13, Iss 3 (2022)
ABSTRACT Fungi produce a wide diversity of secondary metabolites with interesting biological activities for the health, industrial, and agricultural sectors. While fungal genomes have revealed an unexpectedly high number of biosynthetic pathways that
Externí odkaz:
https://doaj.org/article/52bc2dd7e1154ad7b40f30c5ef4def03
Autor:
Justin J.J. van der Hooft, Marnix H. Medema, Tilmann Weber, Tiago Leao, Jorge C. Navarro-Muñoz, Robin Schmid, Corinna Brungs, Mitja M. Zdouc, Barbara Terlouw, Paco Barona-Gómez, Cunliang Geng, Lindsay Caesar
These materials were used as a part of the NPLinker eScience Workshop on Natural Product Genome & Metabolome Mining:https://www.wur.nl/en/research-results/chair-groups/plant-sciences/bioinformatics/teaching/nplinker_workshop.htm Most materials are av
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::1808703388bd77da7f6872e2b2a2d4f3
Autor:
Barbara R Terlouw, Kai Blin, Jorge C Navarro-Muñoz, Nicole E Avalon, Marc G Chevrette, Susan Egbert, Sanghoon Lee, David Meijer, Michael J J Recchia, Zachary L Reitz, Jeffrey A van Santen, Nelly Selem-Mojica, Thomas Tørring, Liana Zaroubi, Mohammad Alanjary, Gajender Aleti, César Aguilar, Suhad A A Al-Salihi, Hannah E Augustijn, J Abraham Avelar-Rivas, Luis A Avitia-Domínguez, Francisco Barona-Gómez, Jordan Bernaldo-Agüero, Vincent A Bielinski, Friederike Biermann, Thomas J Booth, Victor J Carrion Bravo, Raquel Castelo-Branco, Fernanda O Chagas, Pablo Cruz-Morales, Chao Du, Katherine R Duncan, Athina Gavriilidou, Damien Gayrard, Karina Gutiérrez-García, Kristina Haslinger, Eric J N Helfrich, Justin J J van der Hooft, Afif P Jati, Edward Kalkreuter, Nikolaos Kalyvas, Kyo Bin Kang, Satria Kautsar, Wonyong Kim, Aditya M Kunjapur, Yong-Xin Li, Geng-Min Lin, Catarina Loureiro, Joris J R Louwen, Nico L L Louwen, George Lund, Jonathan Parra, Benjamin Philmus, Bita Pourmohsenin, Lotte J U Pronk, Adriana Rego, Devasahayam Arokia Balaya Rex, Serina Robinson, L Rodrigo Rosas-Becerra, Eve T Roxborough, Michelle A Schorn, Darren J Scobie, Kumar Saurabh Singh, Nika Sokolova, Xiaoyu Tang, Daniel Udwary, Aruna Vigneshwari, Kristiina Vind, Sophie P J M Vromans, Valentin Waschulin, Sam E Williams, Jaclyn M Winter, Thomas E Witte, Huali Xie, Dong Yang, Jingwei Yu, Mitja Zdouc, Zheng Zhong, Jérôme Collemare, Roger G Linington, Tilmann Weber, Marnix H Medema
Publikováno v:
Nucleic Acids Research, 51(D1), D603-D610. Oxford University Press
Terlouw, B R, Blin, K, Navarro-Muñoz, J C, Avalon, N E, Chevrette, M G, Egbert, S, Lee, S, Meijer, D, Recchia, M J J, Reitz, ZL, van Santen, JA, Selem-Mojica, N, Tørring, T, Zaroubi, L, Alanjary, M, Aleti, G, Aguilar, C, Al-Salihi, S A A, Augustijn, HE, Avelar-Rivas, JA, Avitia-Domínguez, LA, Barona-Gómez, F, Bernaldo-Agüero, J, Bielinski, V A, Biermann, F, Booth, TJ, Carrion Bravo, VJ, Castelo-Branco, R, Chagas, FO, Cruz-Morales, P, Du, C, Duncan, KR, Gavriilidou, A, Gayrard, D, Gutiérrez-García, K, Haslinger, K, Helfrich, E J N, van der Hooft, J J J, Jati, AP, Kalkreuter, E, Kalyvas, N, Kang, KB, Kautsar, S, Kim, W, Kunjapur, AM, Li, Y-X, Lin, G-M, Loureiro, C, Louwen, J J R, Louwen, N L L, Lund, G, Parra, J, Philmus, B, Pourmohsenin, B, Pronk, L J U, Rego, A, Rex, DAB, Robinson, S, Rosas-Becerra, LR, Roxborough, ET, Schorn, MA, Scobie, DJ, Singh, KS, Sokolova, N, Tang, X, Udwary, D, Vigneshwari, A, Vind, K, Vromans, S P J M, Waschulin, V, Williams, SE, Winter, JM, Witte, TE, Xie, H, Yang, D, Yu, J, Zdouc, M, Zhong, Z, Collemare, J, Linington, RG, Weber, T & Medema, MH 2023, ' MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters ', Nucleic Acids Research, vol. 51, no. D1, gkac1049, pp. D603-D610 . https://doi.org/10.1093/nar/gkac1049
Terlouw, B R, Blin, K, Navarro-Muñoz, J C, Avalon, N E, Chevrette, M G, Egbert, S, Lee, S, Meijer, D, Recchia, M J J, Reitz, Z L, van Santen, J A, Selem-Mojica, N, Tørring, T, Zaroubi, L, Alanjary, M, Aleti, G, Aguilar, C, Al-Salihi, S A A, Augustijn, H E, Avelar-Rivas, J A, Avitia-Domínguez, L A, Barona-Gómez, F, Bernaldo-Agüero, J, Bielinski, V A, Biermann, F, Booth, T J, Carrion Bravo, V J, Castelo-Branco, R, Chagas, F O, Cruz-Morales, P, Du, C, Duncan, K R, Gavriilidou, A, Gayrard, D, Gutiérrez-García, K, Haslinger, K, Helfrich, E J N, van der Hooft, J J J, Jati, A P, Kalkreuter, E, Kalyvas, N, Kang, K B, Kautsar, S, Kim, W, Kunjapur, A M, Li, Y-X, Lin, G-M, Loureiro, C, Louwen, J J R, Louwen, N L L, Lund, G, Parra, J, Philmus, B, Pourmohsenin, B, Pronk, L J U, Rego, A, Rex, D A B, Robinson, S, Rosas-Becerra, L R, Roxborough, E T, Schorn, M A, Scobie, D J, Singh, K S, Sokolova, N, Tang, X, Udwary, D, Vigneshwari, A, Vind, K, Vromans, S P J M, Waschulin, V, Williams, S E, Winter, J M, Witte, T E, Xie, H, Yang, D, Yu, J, Zdouc, M, Zhong, Z, Collemare, J, Linington, R G, Weber, T & Medema, M H 2023, ' MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters ', Nucleic Acids Research, vol. 51, no. D1, pp. D603–D610 . https://doi.org/10.1093/nar/gkac1049
Terlouw, B R, Blin, K, Navarro-Muñoz, J C, Avalon, N E, Chevrette, M G, Egbert, S, Lee, S, Meijer, D, Recchia, M J J, Reitz, Z L, van Santen, J A, Selem-Mojica, N, Tørring, T, Zaroubi, L, Alanjary, M, Aleti, G, Aguilar, C, Al-Salihi, S A A, Augustijn, H E, Avelar-Rivas, J A, Avitia-Domínguez, L A, Barona-Gómez, F, Bernaldo-Agüero, J, Bielinski, V A, Biermann, F, Booth, T J, Carrion Bravo, V J, Castelo-Branco, R, Chagas, F O, Cruz-Morales, P, Du, C, Duncan, K R, Gavriilidou, A, Gayrard, D, Gutiérrez-García, K, Haslinger, K, Helfrich, E J N, van der Hooft, J J J, Jati, A P, Kalkreuter, E, Kalyvas, N, Kang, K B, Kautsar, S, Kim, W, Kunjapur, A M, Li, Y-X, Lin, G-M, Loureiro, C, Louwen, J J R, Louwen, N L L, Lund, G, Parra, J, Philmus, B, Pourmohsenin, B, Pronk, L J U, Rego, A, Rex, D A B, Robinson, S, Rosas-Becerra, L R, Roxborough, E T, Schorn, M A, Scobie, D J, Singh, K S, Sokolova, N, Tang, X, Udwary, D, Vigneshwari, A, Vind, K, Vromans, S P J M, Waschulin, V, Williams, S E, Winter, J M, Witte, T E, Xie, H, Yang, D, Yu, J, Zdouc, M, Zhong, Z, Collemare, J, Linington, R G, Weber, T & Medema, M H 2023, ' MIBiG 3.0 : a community-driven effort to annotate experimentally validated biosynthetic gene clusters ', Nucleic Acids Research, vol. 51, no. D1, pp. D603–D610 . https://doi.org/10.1093/nar/gkac1049
Nucleic acids research, 51(D1), D603-D610
Nucleic acids research 51 (2023) D1
Terlouw, B R, Blin, K, Navarro-Muñoz, J C, Avalon, N E, Chevrette, M G, Egbert, S, Lee, S, Meijer, D, Recchia, M J J, Reitz, ZL, van Santen, JA, Selem-Mojica, N, Tørring, T, Zaroubi, L, Alanjary, M, Aleti, G, Aguilar, C, Al-Salihi, S A A, Augustijn, HE, Avelar-Rivas, JA, Avitia-Domínguez, LA, Barona-Gómez, F, Bernaldo-Agüero, J, Bielinski, V A, Biermann, F, Booth, TJ, Carrion Bravo, VJ, Castelo-Branco, R, Chagas, FO, Cruz-Morales, P, Du, C, Duncan, KR, Gavriilidou, A, Gayrard, D, Gutiérrez-García, K, Haslinger, K, Helfrich, E J N, van der Hooft, J J J, Jati, AP, Kalkreuter, E, Kalyvas, N, Kang, KB, Kautsar, S, Kim, W, Kunjapur, AM, Li, Y-X, Lin, G-M, Loureiro, C, Louwen, J J R, Louwen, N L L, Lund, G, Parra, J, Philmus, B, Pourmohsenin, B, Pronk, L J U, Rego, A, Rex, DAB, Robinson, S, Rosas-Becerra, LR, Roxborough, ET, Schorn, MA, Scobie, DJ, Singh, KS, Sokolova, N, Tang, X, Udwary, D, Vigneshwari, A, Vind, K, Vromans, S P J M, Waschulin, V, Williams, SE, Winter, JM, Witte, TE, Xie, H, Yang, D, Yu, J, Zdouc, M, Zhong, Z, Collemare, J, Linington, RG, Weber, T & Medema, MH 2023, ' MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters ', Nucleic Acids Research, vol. 51, no. D1, gkac1049, pp. D603-D610 . https://doi.org/10.1093/nar/gkac1049
Terlouw, B R, Blin, K, Navarro-Muñoz, J C, Avalon, N E, Chevrette, M G, Egbert, S, Lee, S, Meijer, D, Recchia, M J J, Reitz, Z L, van Santen, J A, Selem-Mojica, N, Tørring, T, Zaroubi, L, Alanjary, M, Aleti, G, Aguilar, C, Al-Salihi, S A A, Augustijn, H E, Avelar-Rivas, J A, Avitia-Domínguez, L A, Barona-Gómez, F, Bernaldo-Agüero, J, Bielinski, V A, Biermann, F, Booth, T J, Carrion Bravo, V J, Castelo-Branco, R, Chagas, F O, Cruz-Morales, P, Du, C, Duncan, K R, Gavriilidou, A, Gayrard, D, Gutiérrez-García, K, Haslinger, K, Helfrich, E J N, van der Hooft, J J J, Jati, A P, Kalkreuter, E, Kalyvas, N, Kang, K B, Kautsar, S, Kim, W, Kunjapur, A M, Li, Y-X, Lin, G-M, Loureiro, C, Louwen, J J R, Louwen, N L L, Lund, G, Parra, J, Philmus, B, Pourmohsenin, B, Pronk, L J U, Rego, A, Rex, D A B, Robinson, S, Rosas-Becerra, L R, Roxborough, E T, Schorn, M A, Scobie, D J, Singh, K S, Sokolova, N, Tang, X, Udwary, D, Vigneshwari, A, Vind, K, Vromans, S P J M, Waschulin, V, Williams, S E, Winter, J M, Witte, T E, Xie, H, Yang, D, Yu, J, Zdouc, M, Zhong, Z, Collemare, J, Linington, R G, Weber, T & Medema, M H 2023, ' MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters ', Nucleic Acids Research, vol. 51, no. D1, pp. D603–D610 . https://doi.org/10.1093/nar/gkac1049
Terlouw, B R, Blin, K, Navarro-Muñoz, J C, Avalon, N E, Chevrette, M G, Egbert, S, Lee, S, Meijer, D, Recchia, M J J, Reitz, Z L, van Santen, J A, Selem-Mojica, N, Tørring, T, Zaroubi, L, Alanjary, M, Aleti, G, Aguilar, C, Al-Salihi, S A A, Augustijn, H E, Avelar-Rivas, J A, Avitia-Domínguez, L A, Barona-Gómez, F, Bernaldo-Agüero, J, Bielinski, V A, Biermann, F, Booth, T J, Carrion Bravo, V J, Castelo-Branco, R, Chagas, F O, Cruz-Morales, P, Du, C, Duncan, K R, Gavriilidou, A, Gayrard, D, Gutiérrez-García, K, Haslinger, K, Helfrich, E J N, van der Hooft, J J J, Jati, A P, Kalkreuter, E, Kalyvas, N, Kang, K B, Kautsar, S, Kim, W, Kunjapur, A M, Li, Y-X, Lin, G-M, Loureiro, C, Louwen, J J R, Louwen, N L L, Lund, G, Parra, J, Philmus, B, Pourmohsenin, B, Pronk, L J U, Rego, A, Rex, D A B, Robinson, S, Rosas-Becerra, L R, Roxborough, E T, Schorn, M A, Scobie, D J, Singh, K S, Sokolova, N, Tang, X, Udwary, D, Vigneshwari, A, Vind, K, Vromans, S P J M, Waschulin, V, Williams, S E, Winter, J M, Witte, T E, Xie, H, Yang, D, Yu, J, Zdouc, M, Zhong, Z, Collemare, J, Linington, R G, Weber, T & Medema, M H 2023, ' MIBiG 3.0 : a community-driven effort to annotate experimentally validated biosynthetic gene clusters ', Nucleic Acids Research, vol. 51, no. D1, pp. D603–D610 . https://doi.org/10.1093/nar/gkac1049
Nucleic acids research, 51(D1), D603-D610
Nucleic acids research 51 (2023) D1
With an ever-increasing amount of (meta)genomic data being deposited in sequence databases, (meta)genome mining for natural product biosynthetic pathways occupies a critical role in the discovery of novel pharmaceutical drugs, crop protection agents
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5e557bd5c3d2ddd7d6574fc9d08027c2
https://pure.knaw.nl/portal/en/publications/4e99309a-6840-4150-801f-070cfa20d40c
https://pure.knaw.nl/portal/en/publications/4e99309a-6840-4150-801f-070cfa20d40c
Publikováno v:
Genomics, 114(6):110525. Academic Press
Non-ribosomal peptide synthetases (NRPSs) and NRPS-like enzymes are abundant in microbes as they are involved in the production of primary and secondary metabolites. In contrast to the well-studied NRPSs, known to produce non-ribosomal peptides, NRPS
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e292195bb5b7d2440d8a0e1afd44ef31
https://pubmed.ncbi.nlm.nih.gov/36423773
https://pubmed.ncbi.nlm.nih.gov/36423773
Publikováno v:
Encyclopedia of Mycology, 458-476
STARTPAGE=458;ENDPAGE=476;TITLE=Encyclopedia of Mycology
STARTPAGE=458;ENDPAGE=476;TITLE=Encyclopedia of Mycology
Fungi are well known producers of bioactive molecules known as secondary metabolites (SMs). While they determine the survival of fungi in their ecological niches, SMs have also impacted human societies as important medicines and mycotoxins. Research
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::142bb5c44b2851a1c7dbeb26cc800271
https://hdl.handle.net/20.500.11755/95f4a283-4df3-4878-b5e1-ae6a6a2cdb62
https://hdl.handle.net/20.500.11755/95f4a283-4df3-4878-b5e1-ae6a6a2cdb62
Publikováno v:
Frontiers in Microbiology, 10:3018. Frontiers Media SA
Frontiers in Microbiology, Vol 10 (2020)
Frontiers in Microbiology
Frontiers in Microbiology, Vol 10 (2020)
Frontiers in Microbiology
Type III polyketide synthases (PKSs) produce secondary metabolites with diverse biological activities, including antimicrobials. While they have been extensively studied in plants and bacteria, only a handful of type III PKSs from fungi has been char
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::37952d11911663d039f733a112be6d88
https://pure.knaw.nl/portal/en/publications/7315c1b6-31f0-4abd-8012-b72375eb7bb9
https://pure.knaw.nl/portal/en/publications/7315c1b6-31f0-4abd-8012-b72375eb7bb9
Autor:
Jorge C. Navarro-Muñoz, Auke W. de Jong, Pieter-Jan A. Haas, Ratna Mohd Tap, Ferry Hagen, Bert Gerrits van den Ende, Euníce R Then, Jérôme Collemare
Publikováno v:
Mycopathologia, 184, 731-734. Springer Netherlands
Mycopathologia, 184(6), 731-734. Springer Netherlands
Mycopathologia, 184(6), 731-734. Springer Netherlands
Candida vulturna is a new member of the Candida haemulonii species complex that recently received much attention as it includes the emerging multidrug-resistant pathogen Candida auris. Here, we describe the high-quality genome sequence of C. vulturna
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6771b57c1f498aaed5af8b4e648c4abc
https://pure.knaw.nl/portal/en/publications/bb170e51-5206-4034-abe6-a40404fa8704
https://pure.knaw.nl/portal/en/publications/bb170e51-5206-4034-abe6-a40404fa8704
Autor:
Samuel C. Epstein, Ashley C. Sisto, Tilmann Weber, Victòria Pascal Andreu, Jorge C. Navarro-Muñoz, George Lund, Justin J. J. van der Hooft, Louise K. Charkoudian, Kai Blin, Jérôme Collemare, Mohammad Alanjary, Nelly Selem-Mojica, Marnix H. Medema, Vittorio Tracanna, Barbara R. Terlouw, Satria A. Kautsar, Simon Shaw, Hernando G. Suarez Duran, Serina L. Robinson, Jeffrey A. van Santen, Roger G. Linington
Publikováno v:
Nucleic Acids Research. Oxford University Press
Kautsar, S A, Blin, K, Shaw, S, Navarro-Muñoz, J C, Terlouw, B R, van der Hooft, J J J, van Santen, J A, Tracanna, V, Suarez Duran, H G, Pascal Andreu, V, Selem-Mojica, N, Alanjary, M, Robinson, S L, Lund, G, Epstein, S C, Sisto, A C, Charkoudian, L K, Collemare, J, Linington, R G, Weber, T & Medema, M H 2020, ' MIBiG 2.0: a repository for biosynthetic gene clusters of known function ', Nucleic Acids Research, vol. 48, pp. D454–D458 . https://doi.org/10.1093/nar/gkz882
Nucleic acids research, 48(D1), D454-D458
Nucleic acids research 48 (2020) D1
Nucleic Acids Research
Kautsar, S A, Blin, K, Shaw, S, Navarro-Muñoz, J C, Terlouw, B R, van der Hooft, J J J, van Santen, J A, Tracanna, V, Suarez Duran, H G, Pascal Andreu, V, Selem-Mojica, N, Alanjary, M, Robinson, S L, Lund, G, Epstein, S C, Sisto, A C, Charkoudian, L K, Collemare, J, Linington, R G, Weber, T & Medema, M H 2020, ' MIBiG 2.0: a repository for biosynthetic gene clusters of known function ', Nucleic Acids Research, vol. 48, pp. D454–D458 . https://doi.org/10.1093/nar/gkz882
Nucleic acids research, 48(D1), D454-D458
Nucleic acids research 48 (2020) D1
Nucleic Acids Research
Fueled by the explosion of (meta)genomic data, genome mining of specialized metabolites has become a major technology for drug discovery and studying microbiome ecology. In these efforts, computational tools like antiSMASH have played a central role
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::093a1f279049461569ca81e68d9b9e6b
https://doi.org/10.1093/nar/gkz882
https://doi.org/10.1093/nar/gkz882
Autor:
Christiane Liers, Jorge C. Navarro-Muñoz, Enrico Büttner, Jérôme Collemare, Anna Maria Gebauer, Harald Kellner, Martin Hofrichter
Publikováno v:
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 8(17). American Society for Microbiology
Chlorociboria aeruginascens DSM 107184 is a wood-decomposing ascomycetous fungus known to produce the bluish-green dimeric naphthoquinone derivate xylindein. Here, we present the first draft genome sequence, which contains 588 contigs with a total le
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::11c103f05c4eab139dab4f01ec4e7dd9
https://hdl.handle.net/20.500.11755/5b9762c9-5d0a-442f-a525-ab98c0b004c1
https://hdl.handle.net/20.500.11755/5b9762c9-5d0a-442f-a525-ab98c0b004c1