Zobrazeno 1 - 10
of 182
pro vyhledávání: '"Jonoska, Nataša"'
Autor:
Channagiri, Tejasvi, Ferrari, Margherita Maria, Jeon, Youngkyu, Xu, Penghao, Storici, Francesca, Jonoska, Nataša
Double-strand breaks (DSBs) in DNA are naturally occurring destructive events in all organisms that may lead to genome instability. Cells employ various repair methods known as non-homologous end joining (NHEJ), microhomology mediated end joining (MM
Externí odkaz:
http://arxiv.org/abs/2312.17590
We propose custom made cell complexes, in particular prodsimplicial complexes, in order to analyze data consisting of directed graphs. These are constructed by attaching cells that are products of simplices and are suited to study data of acyclic dir
Externí odkaz:
http://arxiv.org/abs/2305.05818
We consider non-cooperative binding, so-called 'temperature 1', in deterministic or directed (called here confluent) tile self-assembly systems in two dimensions and show a necessary and sufficient condition for such system to have an ultimately peri
Externí odkaz:
http://arxiv.org/abs/2202.05165
We initiate an algebraic approach to study DNA origami structures by associating an element from a monoid to each structure. We identify two types of basic building blocks and describe an DNA origami structure with their composition. These building b
Externí odkaz:
http://arxiv.org/abs/1901.09120
We consider non cooperative binding in so called `temperature 1', in deterministic (here called {\it confluent}) tile self-assembly systems (1-TAS) and prove the standing conjecture that such systems do not have universal computational power. We call
Externí odkaz:
http://arxiv.org/abs/1901.08575
Autor:
Cruz, Daniel A., Ferrari, Margherita Maria, Jonoska, Natasa, Nabergall, Lukas, Saito, Masahico
A double occurrence word (DOW) is a word in which every symbol appears exactly twice; two DOWs are equivalent if one is a symbol-to-symbol image of the other. We consider the so called repeat pattern ($\alpha\alpha$) and the return pattern ($\alpha\a
Externí odkaz:
http://arxiv.org/abs/1811.11739
Akademický článek
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DNA rearrangement processes recombine gene segments that are organized on the chromosome in a variety of ways. The segments can overlap, interleave or one may be a subsegment of another. We use directed graphs to represent segment organizations on a
Externí odkaz:
http://arxiv.org/abs/1801.05922
Publikováno v:
Theoretical Computer Science, Volume 701, Pages 109-119, 2017
We consider global dynamics of reaction systems as introduced by Ehrenfeucht and Rozenberg. The dynamics is represented by a directed graph, the so-called transition graph, and two reaction systems are considered equivalent if their corresponding tra
Externí odkaz:
http://arxiv.org/abs/1701.01895
Autor:
Jeon, Youngkyu, Lu, Yilin, Ferrari, Margherita Maria, Channagiri, Tejasvi, Xu, Penghao, Meers, Chance, Zhang, Yiqi, Balachander, Sathya, Park, Vivian S., Marsili, Stefania, Pursell, Zachary F., Jonoska, Nataša, Storici, Francesca
Publikováno v:
Nature Communications; 9/11/2024, Vol. 15 Issue 1, p1-24, 24p