Zobrazeno 1 - 10
of 76
pro vyhledávání: '"Jonathan L Klassen"'
Autor:
Jonathan L Klassen
Publikováno v:
eLife, Vol 8 (2019)
Beewolf wasp eggs release nitrogen oxides to provide protection against fungi and other microbes.
Externí odkaz:
https://doaj.org/article/4fa742137d104074b6b02bf6da2d3b7b
Autor:
Ricardo R da Silva, Mingxun Wang, Louis-Félix Nothias, Justin J J van der Hooft, Andrés Mauricio Caraballo-Rodríguez, Evan Fox, Marcy J Balunas, Jonathan L Klassen, Norberto Peporine Lopes, Pieter C Dorrestein
Publikováno v:
PLoS Computational Biology, Vol 14, Iss 4, p e1006089 (2018)
The annotation of small molecules is one of the most challenging and important steps in untargeted mass spectrometry analysis, as most of our biological interpretations rely on structural annotations. Molecular networking has emerged as a structured
Externí odkaz:
https://doaj.org/article/ae9a7fb0779e440aaab205babe300dc0
Autor:
Sarah M Kopac, Jonathan L Klassen
Publikováno v:
Frontiers in Microbiology, Vol 7 (2016)
Virtually all multicellular organisms host a community of symbionts composed of mutualistic, commensal, and pathogenic microbes, i.e., their microbiome. The mechanism of selection on host-microbe assemblages remains contentious, particularly regardin
Externí odkaz:
https://doaj.org/article/77254fc1a49e4bb0a26c23164614d78f
Autor:
Jonathan L Klassen, Cameron R Currie
Publikováno v:
PLoS ONE, Vol 8, Iss 3, p e58387 (2013)
The high-throughput annotation of open reading frames (ORFs) required by modern genome sequencing projects necessitates computational protocols that sometimes annotate orthologous ORFs inconsistently. Such inconsistencies hinder comparative analyses
Externí odkaz:
https://doaj.org/article/32396af81c474c8ebfde41c02038f041
Autor:
Jonathan L Klassen
Publikováno v:
PLoS ONE, Vol 5, Iss 6, p e11257 (2010)
BACKGROUND: Carotenoids are multifunctional, taxonomically widespread and biotechnologically important pigments. Their biosynthesis serves as a model system for understanding the evolution of secondary metabolism. Microbial carotenoid diversity and e
Externí odkaz:
https://doaj.org/article/de93e168091b4d94b4d378e2520491c7
Autor:
Andrés Mauricio Caraballo-Rodríguez, Sara P. Puckett, Kathleen E. Kyle, Daniel Petras, Ricardo da Silva, Louis-Félix Nothias, Madeleine Ernst, Justin J. J. van der Hooft, Anupriya Tripathi, Mingxun Wang, Marcy J. Balunas, Jonathan L. Klassen, Pieter C. Dorrestein
Publikováno v:
mSystems, Vol 6, Iss 4 (2021)
ABSTRACT Many ant species grow fungus gardens that predigest food as an essential step of the ants’ nutrient uptake. These symbiotic fungus gardens have long been studied and feature a gradient of increasing substrate degradation from top to bottom
Externí odkaz:
https://doaj.org/article/ea17a3d612a146f085797373a8163800
Autor:
Kathleen E. Kyle, Sara P. Puckett, Andrés Mauricio Caraballo-Rodríguez, José Rivera-Chávez, Robert M. Samples, Cody E. Earp, Huzefa A. Raja, Cedric J. Pearce, Madeleine Ernst, Justin J.J. van der Hooft, Madison E. Adams, Nicholas H. Oberlies, Pieter C. Dorrestein, Jonathan L. Klassen, Marcy J. Balunas
Fungus-growing ants depend on a fungal mutualist that can fall prey to fungal pathogens. This mutualist is cultivated by these ants in structures called fungus gardens. Ants exhibit weeding behaviors that keep their fungus gardens healthy by physical
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::886eee458ae31acf89f7580e0b18cd45
https://doi.org/10.1101/2022.11.12.516288
https://doi.org/10.1101/2022.11.12.516288
Autor:
Kathryn C. Milligan-McClellan, José Pablo Dundore-Arias, Jonathan L. Klassen, Ashley Shade, Linda L. Kinkel, Benjamin E. Wolfe
Publikováno v:
mSystems. 7(5)
The diversity and functional significance of microbiomes have become increasingly clear through the extensive sampling of Earth's many habitats and the rapid adoption of new sequencing technologies. However, much remains unknown about what makes a "h
Autor:
Searle S. Duay, Seung I. Yu, Kara Heilemann, M. Daben J. Libardo, Samuel A. Juliano, Jasmin Portelinha, Alfredo M. Angeles-Boza, Jonathan L. Klassen
Publikováno v:
Chemical Reviews. 121:2648-2712
The emergence of new pathogens and multidrug resistant bacteria is an important public health issue that requires the development of novel classes of antibiotics. Antimicrobial peptides (AMPs) are a promising platform with great potential for the ide
Autor:
Brayon J. Fremin, Ami S. Bhatt, Nikos C. Kyrpides, Aditi Sengupta, Alexander Sczyrba, Aline Maria da Silva, Alison Buchan, Amelie Gaudin, Andreas Brune, Ann M. Hirsch, Anthony Neumann, Ashley Shade, Axel Visel, Barbara Campbell, Brett Baker, Brian P. Hedlund, Byron C. Crump, Cameron Currie, Charlene Kelly, Chris Craft, Christina Hazard, Christopher Francis, Christopher W. Schadt, Colin Averill, Courtney Mobilian, Dan Buckley, Dana Hunt, Daniel Noguera, David Beck, David L. Valentine, David Walsh, Dawn Sumner, Despoina Lymperopoulou, Devaki Bhaya, Donald A. Bryant, Elise Morrison, Eoin Brodie, Erica Young, Erik Lilleskov, Eva Högfors-Rönnholm, Feng Chen, Frank Stewart, Graeme W. Nicol, Hanno Teeling, Harry R. Beller, Hebe Dionisi, Hui-Ling Liao, J. Michael Beman, James Stegen, James Tiedje, Janet Jansson, Jean VanderGheynst, Jeanette Norton, Jeff Dangl, Jeffrey Blanchard, Jennifer Bowen, Jennifer Macalady, Jennifer Pett-Ridge, Jeremy Rich, Jérôme P. Payet, John D. Gladden, Jonathan D. Raff, Jonathan L. Klassen, Jonathan Tarn, Josh Neufeld, Kelly Gravuer, Kirsten Hofmockel, Ko-Hsuan Chen, Konstantinos Konstantinidis, Kristen M. DeAngelis, Laila P. Partida-Martinez, Laura Meredith, Ludmila Chistoserdova, Mary Ann Moran, Matthew Scarborough, Matthew Schrenk, Matthew Sullivan, Maude David, Michelle A. O'Malley, Monica Medina, Mussie Habteselassie, Nicholas D. Ward, Nicole Pietrasiak, Olivia U. Mason, Patrick O. Sorensen, Paulina Estrada de los Santos, Petr Baldrian, R. Michael McKay, Rachel Simister, Ramunas Stepanauskas, Rebecca Neumann, Rex Malmstrom, Ricardo Cavicchioli, Robert Kelly, Roland Hatzenpichler, Roman Stocker, Rose Ann Cattolico, Ryan Ziels, Rytas Vilgalys, Sara Blumer-Schuette, Sean Crowe, Simon Roux, Steven Hallam, Steven Lindow, Susan H. Brawley, Susannah Tringe, Tanja Woyke, Thea Whitman, Thomas Bianchi, Thomas Mock, Timothy Donohue, Timothy Y. James, Udaya C. Kalluri, Ulas Karaoz, Vincent Denef, Wen-Tso Liu, William Whitman, Yang Ouyang
Publikováno v:
Cell Rep
Small genes (40,000 small-gene families in ~2.3 million phage genome contigs. We find that small genes in phage genomes are approximately 3-fold more prevalent than in host prokaryotic genomes. Our approach enriches for small genes that are translate
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7811364742ad68dd9e3a080fb28629f4
https://doi.org/10.1016/j.celrep.2022.110984
https://doi.org/10.1016/j.celrep.2022.110984