Zobrazeno 1 - 10
of 89
pro vyhledávání: '"Jonathan, Göke"'
Autor:
Nadia M. Davidson, Ying Chen, Teresa Sadras, Georgina L. Ryland, Piers Blombery, Paul G. Ekert, Jonathan Göke, Alicia Oshlack
Publikováno v:
Genome Biology, Vol 23, Iss 1, Pp 1-20 (2022)
Abstract In cancer, fusions are important diagnostic markers and targets for therapy. Long-read transcriptome sequencing allows the discovery of fusions with their full-length isoform structure. However, due to higher sequencing error rates, fusion f
Externí odkaz:
https://doaj.org/article/8afc5627a28e4367be90b0d1b5b70ec9
Autor:
Kie Kyon Huang, Jiawen Huang, Jeanie Kar Leng Wu, Minghui Lee, Su Ting Tay, Vikrant Kumar, Kalpana Ramnarayanan, Nisha Padmanabhan, Chang Xu, Angie Lay Keng Tan, Charlene Chan, Dennis Kappei, Jonathan Göke, Patrick Tan
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-24 (2021)
Abstract Background Deregulated gene expression is a hallmark of cancer; however, most studies to date have analyzed short-read RNA sequencing data with inherent limitations. Here, we combine PacBio long-read isoform sequencing (Iso-Seq) and Illumina
Externí odkaz:
https://doaj.org/article/3769f999db7f45c5ba41d9dc617249e6
Autor:
Axel Lechner, Hans A. Schlößer, Martin Thelen, Kerstin Wennhold, Sacha I. Rothschild, Ramona Gilles, Alexander Quaas, Oliver G. Siefer, Christian U. Huebbers, Engin Cukuroglu, Jonathan Göke, Axel Hillmer, Birgit Gathof, Moritz F. Meyer, Jens P. Klussmann, Alexander Shimabukuro-Vornhagen, Sebastian Theurich, Dirk Beutner, Michael von Bergwelt-Baildon
Publikováno v:
OncoImmunology, Vol 8, Iss 3 (2019)
B lymphocytes are important players in immune responses to cancer. However, their composition and function in head and neck squamous cell carcinoma (HNSCC) has not been well described. Here, we analyzed B cell subsets in HNSCC (n = 38), non-cancerous
Externí odkaz:
https://doaj.org/article/d4690aeed7074fd6ace42666837bf690
Autor:
Hans A. Schlößer, Martin Thelen, Axel Lechner, Kerstin Wennhold, Maria A. Garcia-Marquez, Sacha I. Rothschild, Elena Staib, Thomas Zander, Dirk Beutner, Birgit Gathof, Ramona Gilles, Engin Cukuroglu, Jonathan Göke, Alexander Shimabukuro-Vornhagen, Uta Drebber, Alexander Quaas, Christiane J. Bruns, Arnulf H. Hölscher, Michael S. Von Bergwelt-Baildon
Publikováno v:
OncoImmunology, Vol 8, Iss 1 (2019)
Tumor-infiltrating lymphocytes (TILs) are correlated to prognosis of several kinds of cancer. Most studies focused on T cells, while the role of tumor-associated B cells (TABs) has only recently gained more attention. TABs contain subpopulations with
Externí odkaz:
https://doaj.org/article/e69b1c2d74cb4a0a80fe04831ecf924e
Autor:
Leilei Chen, Jonathan Göke, Jasmin Xin Jia Teo, Chen Ying, Max Wei Jie Lim, Vanessa Hui En Ng, Yangyang Song, Omer An, Ka Wai Leong, Andre Sim, Fernando Bellido Molias
Supplementary Data - Main File
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0db401fff25140e023d72a34260f90ab
https://doi.org/10.1158/0008-5472.22529135
https://doi.org/10.1158/0008-5472.22529135
Autor:
Leilei Chen, Jonathan Göke, Jasmin Xin Jia Teo, Chen Ying, Max Wei Jie Lim, Vanessa Hui En Ng, Yangyang Song, Omer An, Ka Wai Leong, Andre Sim, Fernando Bellido Molias
List of ncNATs expressed in TCGA tumors, for which their associated sense genes have two active alternative promoters
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5053164e5f2db281536f782150051b23
https://doi.org/10.1158/0008-5472.22529129
https://doi.org/10.1158/0008-5472.22529129
Autor:
Yutaka Kondo, Atsushi Natsume, Hui Zong, Toshihiko Wakabayashi, Hiroshi Kimura, Akio Suzumura, Satoru Takahashi, Reo Maruyama, Teppei Shimamura, Jonathan Göke, Shyam Prabhakar, Nirmala Arul Rayan, Shinya Sato, Hiromichi Suzuki, Kosuke Aoki, Akane Yamamichi, Noboru Ogiso, Akira Kato, Miho Suzuki, Keisuke Katsushima, Yusuke Okuno, Yusuke Matsui, Shoichi Deguchi, Keiko Shinjo, Fumiharu Ohka
Gliomas are classified by combining histopathologic and molecular features, including isocitrate dehydrogenase (IDH) status. Although IDH-wild-type diffuse astrocytic glioma (DAG) shows a more aggressive phenotype than IDH-mutant type, lack of knowle
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::bfa54f48a2139bd512f9a7638bf8af42
https://doi.org/10.1158/0008-5472.c.6511293.v1
https://doi.org/10.1158/0008-5472.c.6511293.v1
Autor:
Yutaka Kondo, Atsushi Natsume, Hui Zong, Toshihiko Wakabayashi, Hiroshi Kimura, Akio Suzumura, Satoru Takahashi, Reo Maruyama, Teppei Shimamura, Jonathan Göke, Shyam Prabhakar, Nirmala Arul Rayan, Shinya Sato, Hiromichi Suzuki, Kosuke Aoki, Akane Yamamichi, Noboru Ogiso, Akira Kato, Miho Suzuki, Keisuke Katsushima, Yusuke Okuno, Yusuke Matsui, Shoichi Deguchi, Keiko Shinjo, Fumiharu Ohka
This file explains the additional details of Materials and Methods
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::406b371d69df636e48a3c390eb1894f5
https://doi.org/10.1158/0008-5472.22422645
https://doi.org/10.1158/0008-5472.22422645
Autor:
Yutaka Kondo, Atsushi Natsume, Hui Zong, Toshihiko Wakabayashi, Hiroshi Kimura, Akio Suzumura, Satoru Takahashi, Reo Maruyama, Teppei Shimamura, Jonathan Göke, Shyam Prabhakar, Nirmala Arul Rayan, Shinya Sato, Hiromichi Suzuki, Kosuke Aoki, Akane Yamamichi, Noboru Ogiso, Akira Kato, Miho Suzuki, Keisuke Katsushima, Yusuke Okuno, Yusuke Matsui, Shoichi Deguchi, Keiko Shinjo, Fumiharu Ohka
ST1: Primer list; ST2: The most differentially expressed 401 transcripts (top 1%) in MADM tumors compared with normal brains; ST3: Upregulated 544 genes specifically in MADM tumors not in GL261; ST4: The mutational and expression status of 162 epigen
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2c1b9a92d2d7636e5c0a6986dc3bf6c8
https://doi.org/10.1158/0008-5472.22422642.v1
https://doi.org/10.1158/0008-5472.22422642.v1
Autor:
Yutaka Kondo, Atsushi Natsume, Hui Zong, Toshihiko Wakabayashi, Hiroshi Kimura, Akio Suzumura, Satoru Takahashi, Reo Maruyama, Teppei Shimamura, Jonathan Göke, Shyam Prabhakar, Nirmala Arul Rayan, Shinya Sato, Hiromichi Suzuki, Kosuke Aoki, Akane Yamamichi, Noboru Ogiso, Akira Kato, Miho Suzuki, Keisuke Katsushima, Yusuke Okuno, Yusuke Matsui, Shoichi Deguchi, Keiko Shinjo, Fumiharu Ohka
This file is the legends of Supplementary FigureS1-S7
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::23aa98ea5c1f3f3c2f222c7d4245f729
https://doi.org/10.1158/0008-5472.22422651.v1
https://doi.org/10.1158/0008-5472.22422651.v1