Výsledky vyhledávání - "Jokitalo Eija"

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Segment Anything for Dendrites from Electron Microscopy

Autor: Zhuo, Zewen, Belevich, Ilya, Leinonen, Ville, Jokitalo, Eija, Malm, Tarja, Sierra, Alejandra, Tohka, Jussi

Segmentation of cellular structures in electron microscopy (EM) images is fundamental to analyzing the morphology of neurons and glial cells in the healthy and diseased brain tissue. Current neuronal segmentation applications are based on convolution

Externí odkaz: http://arxiv.org/abs/2411.02562

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A Hitchhiker`s Guide through the Bio-image Analysis Software Universe

Autor: Haase, Robert, Fazeli, Elnaz, Legland, David, Doube, Michael, Culley, Siân, Belevich, Ilya, Jokitalo, Eija, Schorb, Martin, Klemm, Anna, Tischer, Christian

Modern research in the life sciences is unthinkable without computational methods for extracting, quantifying and visualizing information derived from biological microscopy imaging data. In the past decade, we observed a dramatic increase in availabl

Externí odkaz: http://arxiv.org/abs/2204.07547

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gACSON software for automated segmentation and morphology analyses of myelinated axons in 3D electron microscopy

Autor: Behanova, Andrea, Abdollahzadeh, Ali, Belevich, Ilya, Jokitalo, Eija, Sierra, Alejandra, Tohka, Jussi

Background and Objective: Advances in electron microscopy (EM) now allow three-dimensional (3D) imaging of hundreds of micrometers of tissue with nanometer-scale resolution, providing new opportunities to study the ultrastructure of the brain. In thi

Externí odkaz: http://arxiv.org/abs/2112.06476

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Code-free development and deployment of deep segmentation models for digital pathology

Autor: Pettersen, Henrik Sahlin, Belevich, Ilya, Røyset, Elin Synnøve, Smistad, Erik, Jokitalo, Eija, Reinertsen, Ingerid, Bakke, Ingunn, Pedersen, André

Application of deep learning on histopathological whole slide images (WSIs) holds promise of improving diagnostic efficiency and reproducibility but is largely dependent on the ability to write computer code or purchase commercial solutions. We prese

Externí odkaz: http://arxiv.org/abs/2111.08430

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Sphingolipid biosynthesis modulates plasmodesmal ultrastructure and phloem unloading

Autor: Yan, Dawei, Yadav, Shri, Paterlini, Andrea, Nicolas, William, Belevich, Ilya, Grison, Magali, Vaten, Anne, Karami, Leila, El-Showk, Sedeer, Lee, Jung-Youn, Murawska, Gosia, Mortimer, Jenny, Knoblauch, Michael, Jokitalo, Eija, Markham, Jonathan, Bayer, Emmanuelle, Helariutta, Ykä

During phloem unloading, multiple cell-to-cell transport events move organic substances to the root meristem. Although the primary unloading event from the sieve elements to the phloem pole pericycle has been characterized to some extent, little is k

Externí odkaz: http://arxiv.org/abs/1912.03949

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