Zobrazeno 1 - 10
of 70
pro vyhledávání: '"John-Marc Chandonia"'
Autor:
Jennifer L. Goff, Elizabeth G. Szink, Konnor L. Durrence, Lauren M. Lui, Torben N. Nielsen, Jennifer V. Kuehl, Kristopher A. Hunt, John-Marc Chandonia, Jiawen Huang, Michael P. Thorgersen, Farris L. Poole, David A. Stahl, Romy Chakraborty, Adam M. Deutschbauer, Adam P. Arkin, Michael W. W. Adams
Publikováno v:
Environmental Microbiome, Vol 19, Iss 1, Pp 1-17 (2024)
Abstract Castellaniella species have been isolated from a variety of mixed-waste environments including the nitrate and multiple metal-contaminated subsurface at the Oak Ridge Reservation (ORR). Previous studies examining microbial community composit
Externí odkaz:
https://doaj.org/article/21d60b492778453a996873cc86d2594d
Autor:
Valentine V. Trotter, Maxim Shatsky, Morgan N. Price, Thomas R. Juba, Grant M. Zane, Kara B. De León, Erica L.-W. Majumder, Qin Gui, Rida Ali, Kelly M. Wetmore, Jennifer V. Kuehl, Adam P. Arkin, Judy D. Wall, Adam M. Deutschbauer, John-Marc Chandonia, Gareth P. Butland
Publikováno v:
Frontiers in Microbiology, Vol 14 (2023)
Sulfate-reducing bacteria (SRB) are obligate anaerobes that can couple their growth to the reduction of sulfate. Despite the importance of SRB to global nutrient cycles and their damage to the petroleum industry, our molecular understanding of their
Externí odkaz:
https://doaj.org/article/698e9540197c469782ae475458a7cc15
Autor:
Pajau Vangay, Josephine Burgin, Anjanette Johnston, Kristen L. Beck, Daniel C. Berrios, Kai Blumberg, Shane Canon, Patrick Chain, John-Marc Chandonia, Danielle Christianson, Sylvain V. Costes, Joan Damerow, William D. Duncan, Jose Pablo Dundore-Arias, Kjiersten Fagnan, Jonathan M. Galazka, Sean M. Gibbons, David Hays, Judson Hervey, Bin Hu, Bonnie L. Hurwitz, Pankaj Jaiswal, Marcin P. Joachimiak, Linda Kinkel, Joshua Ladau, Stanton L. Martin, Lee Ann McCue, Kayd Miller, Nigel Mouncey, Chris Mungall, Evangelos Pafilis, T. B. K. Reddy, Lorna Richardson, Simon Roux, Lynn M. Schriml, Justin P. Shaffer, Jagadish Chandrabose Sundaramurthi, Luke R. Thompson, Ruth E. Timme, Jie Zheng, Elisha M. Wood-Charlson, Emiley A. Eloe-Fadrosh
Publikováno v:
mSystems, Vol 6, Iss 3 (2021)
Externí odkaz:
https://doaj.org/article/8088343836d242e09be9d0e6184d219d
Autor:
Ankita Kothari, Simon Roux, Hanqiao Zhang, Anatori Prieto, Drishti Soneja, John-Marc Chandonia, Sarah Spencer, Xiaoqin Wu, Sara Altenburg, Matthew W. Fields, Adam M. Deutschbauer, Adam P. Arkin, Eric J. Alm, Romy Chakraborty, Aindrila Mukhopadhyay
Publikováno v:
mSystems, Vol 6, Iss 3 (2021)
To our knowledge, this is the first study to identify the bacteriophage distribution in a groundwater ecosystem shedding light on their prevalence and distribution across metal-contaminated and background sites. Our study is uniquely based on selecti
Externí odkaz:
https://doaj.org/article/d5c0fb7dc7c14eb0aa58849b0dcd52ae
Autor:
Pajau Vangay, Josephine Burgin, Anjanette Johnston, Kristen L. Beck, Daniel C. Berrios, Kai Blumberg, Shane Canon, Patrick Chain, John-Marc Chandonia, Danielle Christianson, Sylvain V. Costes, Joan Damerow, William D. Duncan, Jose Pablo Dundore-Arias, Kjiersten Fagnan, Jonathan M. Galazka, Sean M. Gibbons, David Hays, Judson Hervey, Bin Hu, Bonnie L. Hurwitz, Pankaj Jaiswal, Marcin P. Joachimiak, Linda Kinkel, Joshua Ladau, Stanton L. Martin, Lee Ann McCue, Kayd Miller, Nigel Mouncey, Chris Mungall, Evangelos Pafilis, T. B. K. Reddy, Lorna Richardson, Simon Roux, Lynn M. Schriml, Justin P. Shaffer, Jagadish Chandrabose Sundaramurthi, Luke R. Thompson, Ruth E. Timme, Jie Zheng, Elisha M. Wood-Charlson, Emiley A. Eloe-Fadrosh
Publikováno v:
mSystems, Vol 6, Iss 1 (2021)
ABSTRACT Microbiome samples are inherently defined by the environment in which they are found. Therefore, data that provide context and enable interpretation of measurements produced from biological samples, often referred to as metadata, are critica
Externí odkaz:
https://doaj.org/article/70ee1fcbc18e476ebb6a193f72670ad9
Autor:
Xiaoxuan Ge, Michael P. Thorgersen, Farris L. Poole, Adam M. Deutschbauer, John-Marc Chandonia, Pavel S. Novichkov, Sara Gushgari-Doyle, Lauren M. Lui, Torben Nielsen, Romy Chakraborty, Paul D. Adams, Adam P. Arkin, Terry C. Hazen, Michael W. W. Adams
Publikováno v:
Frontiers in Microbiology, Vol 11 (2020)
A nitrate- and metal-contaminated site at the Oak Ridge Reservation (ORR) was previously shown to contain the metal molybdenum (Mo) at picomolar concentrations. This potentially limits microbial nitrate reduction, as Mo is required by the enzyme nitr
Externí odkaz:
https://doaj.org/article/48652f7bb37b4fe1ad7bb3e37a569fc8
Autor:
Ankita Kothari, Yu-Wei Wu, John-Marc Chandonia, Marimikel Charrier, Lara Rajeev, Andrea M. Rocha, Dominique C. Joyner, Terry C. Hazen, Steven W. Singer, Aindrila Mukhopadhyay
Publikováno v:
mBio, Vol 10, Iss 1 (2019)
ABSTRACT Naturally occurring plasmids constitute a major category of mobile genetic elements responsible for harboring and transferring genes important in survival and fitness. A targeted evaluation of plasmidomes can reveal unique adaptations requir
Externí odkaz:
https://doaj.org/article/485f429716ae4f7e8f9cf5acde61517c
Autor:
Swapnil R Chhabra, Marcin P Joachimiak, Christopher J Petzold, Grant M Zane, Morgan N Price, Sonia A Reveco, Veronica Fok, Alyssa R Johanson, Tanveer S Batth, Mary Singer, John-Marc Chandonia, Dominique Joyner, Terry C Hazen, Adam P Arkin, Judy D Wall, Anup K Singh, Jay D Keasling
Publikováno v:
PLoS ONE, Vol 6, Iss 6, p e21470 (2011)
Protein-protein interactions offer an insight into cellular processes beyond what may be obtained by the quantitative functional genomics tools of proteomics and transcriptomics. The aforementioned tools have been extensively applied to study Escheri
Externí odkaz:
https://doaj.org/article/db57e60d8340453580020551cc7718b3
Autor:
Shibu Yooseph, Granger Sutton, Douglas B Rusch, Aaron L Halpern, Shannon J Williamson, Karin Remington, Jonathan A Eisen, Karla B Heidelberg, Gerard Manning, Weizhong Li, Lukasz Jaroszewski, Piotr Cieplak, Christopher S Miller, Huiying Li, Susan T Mashiyama, Marcin P Joachimiak, Christopher van Belle, John-Marc Chandonia, David A Soergel, Yufeng Zhai, Kannan Natarajan, Shaun Lee, Benjamin J Raphael, Vineet Bafna, Robert Friedman, Steven E Brenner, Adam Godzik, David Eisenberg, Jack E Dixon, Susan S Taylor, Robert L Strausberg, Marvin Frazier, J Craig Venter
Publikováno v:
PLoS Biology, Vol 5, Iss 3, p e16 (2007)
Metagenomics projects based on shotgun sequencing of populations of micro-organisms yield insight into protein families. We used sequence similarity clustering to explore proteins with a comprehensive dataset consisting of sequences from available da
Externí odkaz:
https://doaj.org/article/d3c8becc5a9947e1bccad4901b6de6ec
Autor:
Jennifer L. Goff, Elizabeth G. Szink, Michael P. Thorgersen, Andrew D. Putt, Yupeng Fan, Lauren M. Lui, Torben N. Nielsen, Kristopher A. Hunt, Jonathan P. Michael, Yajiao Wang, Daliang Ning, Ying Fu, Joy D. Van Nostrand, Farris L. Poole, John‐Marc Chandonia, Terry C. Hazen, David A. Stahl, Jizhong Zhou, Adam P. Arkin, Michael W. W. Adams
Publikováno v:
Environmental Microbiology. 24:5546-5560
Bacillus cereus strain CPT56D-587-MTF (CPTF) was isolated from the highly contaminated Oak Ridge Reservation (ORR) subsurface. This site is contaminated with high levels of nitric acid and multiple heavy metals. Amplicon sequencing of the 16S rRNA ge