Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta)

Autor: Jeremy Schmutz, John T. Singer, John W. Stiller, Simon Prochnik, Daniel S. Rokhsar, Juying Yan, Alison G. Smith, Yong Zou, Yi Peng, Cheong Xin Chan, Huan Qiu, Tara N. Marriage, Beverley R. Green, Crysten E. Blaby-Haas, Katherine E. Helliwell, Jasmyn Pangilinan, Elizabeth Ficko-Blean, Jonas Collén, Jane Grimwood, Shengqiang Shu, Susan H. Brawley, Glen L. Wheeler, Erika Lindquist, Yuanyu Cao, Bradley J. S. C. Olson, Brittany N. Sprecher, Yacine Badis, Steven J. Karpowicz, Charles Yarish, Volker Wagner, Jerry Jenkins, Simon M. Dittami, Yunyun Zhuang, Senjie Lin, Debashish Bhattacharya, Ulrich Johan Kudahl, Anita S. Klein, Nicolas A. Blouin, Zhi-Yong Wang, Wenfei Wang, Kerrie Barry, Gurvan Michel, Simone Zäuner-Riek, Claire M. M. Gachon, Martin Lohr, Jay W. Kim, Arthur R. Grossman, Maria Mittag, Juliet Brodie, Holly V. Goodson

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America, vol 114, iss 31
Proceedings of the National Academy of Sciences of the United States of America
Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences, 2017, 114 (31), pp.E6361-E6370. ⟨10.1073/pnas.1703088114⟩
Brawley, SH; Blouin, NA; Ficko-Blean, E; Wheeler, GL; Lohr, M; Goodson, HV; et al.(2017). Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta). Proceedings of the National Academy of Sciences of the United States of America, 114(31), E6361-E6370. doi: 10.1073/pnas.1703088114. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/5cw666wc

Porphyra umbilicalis (laver) belongs to an ancient group of red algae (Bangiophyceae), is harvested for human food, and thrives in the harsh conditions of the upper intertidal zone. Here we present the 87.7-Mbp haploid Porphyra genome (65.8% G + C co

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c7a18b1725bbb757e4097a79efd19157
https://escholarship.org/uc/item/5cw666wc

Potential role of Mytilus edulis in modulating the infectious pressure of Vibrio anguillarum 02β on an integrated multi-trophic aquaculture farm

Autor: Deborah A. Bouchard, Ian R. Bricknell, Michael R. Pietrak, John T. Singer, Sally D. Molloy

Publikováno v: Aquaculture. :36-39

Marine finfish producers in the Northeast are adopting an integrated multi-trophic aquaculture (IMTA) approach by growing mussels, Mytilus edulis, with marine finfish species. Shellfish play a critical role in an IMTA system by filtering particulate

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::72da39c460cafe7786eec4166deb960b
https://doi.org/10.1016/j.aquaculture.2011.11.024

Microbiological methods for the detection of mutagens and cytotoxic components in wood drying condensates from Douglas fir, red oak, southern yellow pine, yellow poplar and eastern white pine

Autor: John T. Singer, Jennifer A. Jackson, Robert W. Rice

Publikováno v: Journal of Microbiological Methods. 22:229-242

Three microbiological methods of testing for genotoxic chemicals in uncharacterized wood drying condensates were compared. A commercially successful version of the SOS Chromotest, carried out in microtiter plates, was compared with the original assay

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::2c96cc3d8f43ae78f6c4ea5102984867
https://doi.org/10.1016/0167-7012(95)00006-7

Specific resistance to Pseudomonas aeruginosa infection in zebrafish is mediated by the cystic fibrosis transmembrane conductance regulator

Autor: John T. Singer, Ryan Phennicie, Jeffrey A. Yoder, Carol H. Kim, Matthew J. Sullivan

Publikováno v: Infection and immunity. 78(11)

Cystic fibrosis (CF) is a genetic disease caused by recessive mutations in the cystic fibrosis transmembrane conductance regulator (CFTR) gene and is associated with prevalent and chronic Pseudomonas aeruginosa lung infections. Despite numerous studi

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c7728cf0e9152a5d579942d0a2a1d3a7
https://pubmed.ncbi.nlm.nih.gov/20732993

Use of a restriction-defective variant for the construction of stable attenuated strains of the marine fish pathogen Vibrio anguillarum

Autor: John T. Singer, Katherine A. Schmidt, Wonkyu Choe

Publikováno v: Journal of Microbiological Methods. 13:49-60

A method for the in vitro construction of stable attenuated strains of the marine fish pathogen Vibrio anguillarum 775 is described. A cloned gene for a membrane-associated polypeptide, p40, that is required for virulence of V. anguillarum , was inac

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::8383934c44beea6237c90338d1f3bc49
https://doi.org/10.1016/0167-7012(91)90031-k