Zobrazeno 1 - 10
of 65
pro vyhledávání: '"John SantaLucia"'
Autor:
Yuang Sun, Alieysa Patel, John SantaLucia, Emily Roberts, Lili Zhao, Keith Kaye, Krishna Rao, Michael A. Bachman
Publikováno v:
mSphere, Vol 6, Iss 3 (2021)
Colonization by bacterial pathogens often precedes infection and offers a window of opportunity to prevent these infections in the first place. KlebsiellaKlebsiella
Externí odkaz:
https://doaj.org/article/f0a17b3df6ed448aa2bbc6f9c8844ca5
Autor:
Shanmuga Sozhamannan, Ricky Soong, Victoria A. Olson, John SantaLucia, Nancy J. Lin, Linda Beck, Jason D. Gans, Kristian M Roth, Gary Xie, Jeffrey W. Koehler
Publikováno v:
Journal of AOAC International
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8d3796aedc616551ff127d3fc2feca4d
https://doi.org/10.1093/jaoacint/qsaa045
https://doi.org/10.1093/jaoacint/qsaa045
Autor:
Keith S Kaye, John SantaLucia, Emily Roberts, Krishna Rao, Alieysa Patel, Yuang Sun, Michael A. Bachman, Lili Zhao
Publikováno v:
mSphere
mSphere, Vol 6, Iss 3 (2021)
mSphere, Vol 6, Iss 3 (2021)
Klebsiella pneumoniae and the closely related species K. variicola and K. quasipneumoniae are common causes of health care-associated infections, and patients frequently become infected with their intestinal colonizing strain. To assess the associati
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::67e87b3a07804b0a7f46aa1d9b6bd9da
https://pubmed.ncbi.nlm.nih.gov/34160234
https://pubmed.ncbi.nlm.nih.gov/34160234
Autor:
Michael A. Bachman, Keith S Kaye, John SantaLucia, Krishna Rao, Alieysa Patel, Emily Roberts, Lili Zhao, Yuang Sun
BackgroundKlebsiella pneumoniae and closely related species K. variicola and K. quasipneumoniae are common causes of healthcare-associated infections, and patients frequently become infected with their intestinal colonizing strain. To assess the asso
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e46aee2662c3192bff23acfd8c409f3f
https://doi.org/10.1101/2021.02.16.431551
https://doi.org/10.1101/2021.02.16.431551
Autor:
Michael A. Bachman, John SantaLucia, Yuang Sun, Oryan Henig, Owen Albin, Anna M. Seekatz, Krishna Rao, Christine M. Bassis, Robert J. Woods, Alieysa Patel
BackgroundEpidemiologic studies have linked antibiotic exposure to subsequent sepsis, suggesting that microbiome disruption may be in the causal pathway and an independent risk factor. This study tests whether variation in the gut microbiota associat
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c1ee6adf3f97223990387eb4ae2516c5
https://doi.org/10.1101/2021.01.08.426011
https://doi.org/10.1101/2021.01.08.426011
Autor:
John SantaLucia
Publikováno v:
Physics of Life Reviews. 25:29-33
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::dbf59a037e8f3d8c19c54f563c498264
https://doi.org/10.1016/j.plrev.2018.03.008
https://doi.org/10.1016/j.plrev.2018.03.008
Autor:
Nilesh B. Karalkar, Hyo Joong Kim, Andrew D. Ellington, Myong Jung Kim, Steven A. Benner, Shuichi Hoshika, John SantaLucia, Norman E. Watkins, Joseph A. Piccirilli, Alison M. Bates, Nicole A. Leal, Holly A. SantaLucia, Adam J. Meyer, Millie M. Georgiadis, Myong Sang Kim, Saurja DasGupta
Publikováno v:
Biochemistry
Steve Benner and collaborators have recently reported an analysis of DNA containing eight nucleotide letters – the four natural letters dG, dC, dA, and dT, and four additional letters, called dP, dZ, dS, and dB. Their analysis demonstrates that the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::652536020849a6eb7aeb3f5bb75a8039
https://pubmed.ncbi.nlm.nih.gov/31117391
https://pubmed.ncbi.nlm.nih.gov/31117391
Autor:
Greggory M. Rice, Dong Zhang, Yi Xiao, François Major, Joseph A. Piccirilli, Thomas H. Mann, Fang-Chieh Chou, Marcin Biesiada, Clarence Yu Cheng, Feng Ding, Arpit Tandon, Dinshaw J. Patel, Kevin M. Weeks, Alexander J. Becka, Joanna Sarzynska, John SantaLucia, Ryszard W. Adamiak, Kalli Kappel, Rhiju Das, Wipapat Kladwang, Zhichao Miao, Michal J. Boniecki, Robert T. Batey, Katarzyna J. Purzycka, Tomasz Zok, Caleb Geniesse, Aiming Ren, Wayne K. Dawson, Maciej Antczak, Janusz M. Bujnicki, Shi-Jie Chen, Andrey Krokhotin, Jian Wang, Katarzyna Pachulska-Wieczorek, Siqi Tian, Nikolay V. Dokholyan, Xiaojun Xu, Marcin Magnus, Grzegorz Łach, Marta Szachniuk, Stanislaw Dunin-Horkawicz, Jeremiah J. Trausch, Eric Westhof, Benfeard Williams, Mariusz Popenda, Adrian R. Ferré-D'Amaré
Publikováno v:
RNA
RNA, Cold Spring Harbor Laboratory Press, 2017, 23 (5), pp.655-672. ⟨10.1261/rna.060368.116⟩
RNA, Cold Spring Harbor Laboratory Press, 2017, 23 (5), pp.655-672. ⟨10.1261/rna.060368.116⟩
RNA-Puzzles is a collective experiment in blind 3D RNA structure prediction. We report here a third round of RNA-Puzzles. Five puzzles, 4, 8, 12, 13, 14, all structures of riboswitch aptamers and puzzle 7, a ribozyme structure, are included in this r
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c02529620f2174f01acae09e88a752f7
https://hal.archives-ouvertes.fr/hal-02171291
https://hal.archives-ouvertes.fr/hal-02171291
Publikováno v:
Nucleic Acids Research
Helix 69 (H69) is a 19-nt stem-loop region from the large subunit ribosomal RNA. Three pseudouridine (Ψ) modifications clustered in H69 are conserved across phylogeny and known to affect ribosome function. To explore the effects of Ψ on the conform
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f4252bb54685856e44002b2323ca69c1
https://doi.org/10.1093/nar/gkt1329
https://doi.org/10.1093/nar/gkt1329
Autor:
Katarzyna Mikolajczak, Alexander Serganov, Christina Waldsich, Song Cao, Anna Philips, Samuel C. Flores, Rhiju Das, Magdalena Rother, Dinshaw J. Patel, Christopher A. Lavender, Tomasz Puton, Fredrick Sijenyi, Irina Tuszynska, Michal J. Boniecki, John SantaLucia, Kevin M. Weeks, Marcin Skorupski, José Almeida Cruz, Lili Huang, Parin Sripakdeevong, Marc Frédérick Blanchet, Janusz M. Bujnicki, Shi-Jie Chen, Thomas Hermann, François Major, Nikolay V. Dokholyan, Tomasz Sołtysiński, Kristian Rother, Eric Westhof, Michael Wildauer, Neocles B. Leontis, Feng Ding, Véronique Lisi
Publikováno v:
RNA. 18:610-625
We report the results of a first, collective, blind experiment in RNA three-dimensional (3D) structure prediction, encompassing three prediction puzzles. The goals are to assess the leading edge of RNA structure prediction techniques; compare existin
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4bd4efb7aa9ecba8d38c9bc26d7f039c
https://doi.org/10.1261/rna.031054.111
https://doi.org/10.1261/rna.031054.111