Symbiotic revolutions at the interface of genomics and microbiology.

Autor: John M Archibald

Publikováno v: PLoS Biology, Vol 22, Iss 4, p e3002581 (2024)

Symbiosis is an old idea with a contentious history. New genomic technologies and research paradigms are fueling a shift in some of its central tenets; we need to be humble and open-minded about what the data are telling us.

Externí odkaz: https://doaj.org/article/7dbaf365a5f442c08a63a128cd84f0cb

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing.

Autor: Patrick J Keeling, Fabien Burki, Heather M Wilcox, Bassem Allam, Eric E Allen, Linda A Amaral-Zettler, E Virginia Armbrust, John M Archibald, Arvind K Bharti, Callum J Bell, Bank Beszteri, Kay D Bidle, Connor T Cameron, Lisa Campbell, David A Caron, Rose Ann Cattolico, Jackie L Collier, Kathryn Coyne, Simon K Davy, Phillipe Deschamps, Sonya T Dyhrman, Bente Edvardsen, Ruth D Gates, Christopher J Gobler, Spencer J Greenwood, Stephanie M Guida, Jennifer L Jacobi, Kjetill S Jakobsen, Erick R James, Bethany Jenkins, Uwe John, Matthew D Johnson, Andrew R Juhl, Anja Kamp, Laura A Katz, Ronald Kiene, Alexander Kudryavtsev, Brian S Leander, Senjie Lin, Connie Lovejoy, Denis Lynn, Adrian Marchetti, George McManus, Aurora M Nedelcu, Susanne Menden-Deuer, Cristina Miceli, Thomas Mock, Marina Montresor, Mary Ann Moran, Shauna Murray, Govind Nadathur, Satoshi Nagai, Peter B Ngam, Brian Palenik, Jan Pawlowski, Giulio Petroni, Gwenael Piganeau, Matthew C Posewitz, Karin Rengefors, Giovanna Romano, Mary E Rumpho, Tatiana Rynearson, Kelly B Schilling, Declan C Schroeder, Alastair G B Simpson, Claudio H Slamovits, David R Smith, G Jason Smith, Sarah R Smith, Heidi M Sosik, Peter Stief, Edward Theriot, Scott N Twary, Pooja E Umale, Daniel Vaulot, Boris Wawrik, Glen L Wheeler, William H Wilson, Yan Xu, Adriana Zingone, Alexandra Z Worden

Publikováno v: PLoS Biology, Vol 12, Iss 6, p e1001889 (2014)

Externí odkaz: https://doaj.org/article/3908172e85e7462aba1c8a95dcda1fc9

Comparative Plastid Genomics of Non-Photosynthetic Chrysophytes: Genome Reduction and Compaction

Autor: Jong Im Kim, Minseok Jeong, John M. Archibald, Woongghi Shin

Publikováno v: Frontiers in Plant Science, Vol 11 (2020)

Spumella-like heterotrophic chrysophytes are important eukaryotic microorganisms that feed on bacteria in aquatic and soil environments. They are characterized by their lack of pigmentation, naked cell surface, and extremely small size. Although Spum

Externí odkaz: https://doaj.org/article/429ffb4fb0904c3fbf2d5aeaf7b0467b

Horizontal Gene Transfer and Fusion Spread Carotenogenesis Among Diverse Heterotrophic Protists

Autor: Mariana Rius, Joshua S Rest, Gina V Filloramo, Anna M G Novák Vanclová, John M Archibald, Jackie L Collier

Publikováno v: Genome Biology and Evolution. 15

Thraustochytrids (phylum: Labyrinthulomycota) are nonphotosynthetic marine protists. Some thraustochytrids have crtIBY, a trifunctional fusion gene encoding a protein capable of β-carotene biosynthesis from geranylgeranyl pyrophosphate. Here we show

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::80992cac76a64857d36ef2c9cb0d5b25
https://doi.org/10.1093/gbe/evad029

Genomic analysis finds no evidence of canonical eukaryotic DNA processing complexes in a free-living protist

Autor: Dayana E. Salas-Leiva, Bruce A. Curtis, Zhenzhen Yi, Martin Kolisko, Shelby K Williams, Jon Jerlström-Hultqvist, Joan Salas-Leiva, Lucie Gallot-Lavallée, Geert J. P. L. Kops, John M. Archibald, Alastair G. B. Simpson, Andrew J. Roger, Eelco C. Tromer

Publikováno v: Nature Communications, Vol 12, Iss 1, Pp 1-13 (2021)
Nature Communications
Nature Communications, 12(1):6003. Nature Publishing Group
Nature Communications, 12(1). Nature Publishing Group

Funder: Canadian Institutes of Health Research (Grant: FRN-142349) Natural Sciences and Engineering Research Council of Canada (Grant: RGPIN 05871-2014)
Cells replicate and segregate their DNA with precision. Previous studies showed that these r

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e80a3bd35785b4ff3fc4f174ab0ad9f0
https://doaj.org/article/53b88dba845e440e95e7fa4a170fb0c8