Zobrazeno 1 - 10
of 205
pro vyhledávání: '"John M, Archibald"'
Autor:
Christopher R. Schvarcz, Eerik Aunin, Kendra A. Turk-Kubo, Rosalina Stancheva, Jonathan P. Zehr, Victoria McKenna, Samuel T. Wilson, Grieg F. Steward, Kyle F. Edwards, John M. Archibald, Elizabeth Sinclair, Graeme Oatley, Camilla Santos, Noah Gettle, Haoyu Niu, Michael Paulini, Rebecca O’Brien
Publikováno v:
Wellcome Open Research, Vol 9 (2024)
We present the genome assembly of the pennate diatom Epithemia pelagica strain UHM3201 (Ochrophyta; Bacillariophyceae; Rhopalodiales; Rhopalodiaceae) and that of its cyanobacterial endosymbiont (Chroococcales: Aphanothecaceae). The genome sequence of
Externí odkaz:
https://doaj.org/article/e15fedc69e2444fdaec7640853b09c5d
Autor:
John M. Archibald
Publikováno v:
PLoS Biology, Vol 22, Iss 4 (2024)
Externí odkaz:
https://doaj.org/article/b0ec8753c56442eabc0cd3d95ed0a94b
Publikováno v:
BMC Biology, Vol 20, Iss 1, Pp 1-14 (2022)
Abstract Background Cryptophytes are ecologically important algae of interest to evolutionary cell biologists because of the convoluted history of their plastids and nucleomorphs, which are derived from red algal secondary endosymbionts. To better un
Externí odkaz:
https://doaj.org/article/f006055773cd4e6c9e489999d172c2bd
Publikováno v:
STAR Protocols, Vol 4, Iss 1, Pp 102014- (2023)
Summary: Many tools have been developed to measure the degree of similarity between gene duplicates within and between species. Here, we present HSDecipher, a bioinformatics pipeline to assist users in the analysis and visualization of highly similar
Externí odkaz:
https://doaj.org/article/836c5a10466d4b3aa45e62eb48102e97
Autor:
Dayana E. Salas-Leiva, Eelco C. Tromer, Bruce A. Curtis, Jon Jerlström-Hultqvist, Martin Kolisko, Zhenzhen Yi, Joan S. Salas-Leiva, Lucie Gallot-Lavallée, Shelby K. Williams, Geert J. P. L. Kops, John M. Archibald, Alastair G. B. Simpson, Andrew J. Roger
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-6 (2021)
Externí odkaz:
https://doaj.org/article/4f649da9574b44878fcbb40345fe2a83
Autor:
Dayana E. Salas-Leiva, Eelco C. Tromer, Bruce A. Curtis, Jon Jerlström-Hultqvist, Martin Kolisko, Zhenzhen Yi, Joan S. Salas-Leiva, Lucie Gallot-Lavallée, Shelby K. Williams, Geert J. P. L. Kops, John M. Archibald, Alastair G. B. Simpson, Andrew J. Roger
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-13 (2021)
The mechanisms for replicating and segregating DNA are highly conserved across eukaryotes. A comparative genomic analysis of a free-living protist finds a surprising lack of protein complexes involved in these processes, suggesting that the organism
Externí odkaz:
https://doaj.org/article/53b88dba845e440e95e7fa4a170fb0c8
Autor:
Nathan M. Rowarth, Bruce A. Curtis, Anthony L. Einfeldt, John M. Archibald, Christian R. Lacroix, Arunika H. L. A. N. Gunawardena
Publikováno v:
BMC Plant Biology, Vol 21, Iss 1, Pp 1-20 (2021)
Abstract Background The lace plant (Aponogeton madagascariensis) is an aquatic monocot that develops leaves with uniquely formed perforations through the use of a developmentally regulated process called programmed cell death (PCD). The process of pe
Externí odkaz:
https://doaj.org/article/259b86bc69e8484288b3eea1ed87b22e
Publikováno v:
BMC Genomics, Vol 22, Iss 1, Pp 1-25 (2021)
Abstract Background The marine diatoms Thalassiosira pseudonana and Phaeodactylum tricornutum are valuable model organisms for exploring the evolution, diversity and ecology of this important algal group. Their reference genomes, published in 2004 an
Externí odkaz:
https://doaj.org/article/959c405dad7842b4a33fa11772ec1c3a
Publikováno v:
Frontiers in Plant Science, Vol 13 (2022)
The Raphidophyceae is an ecologically important eukaryotic lineage of primary producers and predators that inhabit marine and freshwater environments worldwide. These organisms are of great evolutionary interest because their plastids are the product
Externí odkaz:
https://doaj.org/article/7dbf97774cc44f3eb1f889c25c1c0110
Autor:
Xi Zhang, Yining Hu, Laura Eme, Shinichiro Maruyama, Robert J.M. Eveleigh, Bruce A. Curtis, Shannon J. Sibbald, Julia F. Hopkins, Gina V. Filloramo, Klaas J. van Wijk, John M. Archibald
Publikováno v:
STAR Protocols, Vol 3, Iss 1, Pp 101175- (2022)
Summary: Various bioinformatics protocols have been developed for trimming the number of operational taxonomic units (OTUs) in phylogenetic datasets, but they typically require significant manual intervention. Here we present TreeTuner, a semiautomat
Externí odkaz:
https://doaj.org/article/c1245289dfb04b829337ef7af067e2ff