Zobrazeno 1 - 10
of 23
pro vyhledávání: '"John L Portwood"'
Autor:
Rita K Hayford, Olivia C Haley, Ethalinda K Cannon, John L Portwood, Jack M Gardiner, Carson M Andorf, Margaret R Woodhouse
Publikováno v:
BMC Genomics, Vol 25, Iss 1, Pp 1-16 (2024)
Abstract Background Environmental stress factors, such as biotic and abiotic stress, are becoming more common due to climate variability, significantly affecting global maize yield. Transcriptome profiling studies provide insights into the molecular
Externí odkaz:
https://doaj.org/article/802466f5e32a471eb5f4a9fb37411d24
Autor:
Margaret R. Woodhouse, Ethalinda K. Cannon, John L. Portwood, Lisa C. Harper, Jack M. Gardiner, Mary L. Schaeffer, Carson M. Andorf
Publikováno v:
BMC Plant Biology, Vol 21, Iss 1, Pp 1-10 (2021)
Abstract Research in the past decade has demonstrated that a single reference genome is not representative of a species’ diversity. MaizeGDB introduces a pan-genomic approach to hosting genomic data, leveraging the large number of diverse maize gen
Externí odkaz:
https://doaj.org/article/8daaffcde9b14141b1064649dfd2e59f
Autor:
Nancy Manchanda, John L. Portwood, Margaret R. Woodhouse, Arun S. Seetharam, Carolyn J. Lawrence-Dill, Carson M. Andorf, Matthew B. Hufford
Publikováno v:
BMC Genomics, Vol 21, Iss 1, Pp 1-9 (2020)
Abstract Background Genome assemblies are foundational for understanding the biology of a species. They provide a physical framework for mapping additional sequences, thereby enabling characterization of, for example, genomic diversity and difference
Externí odkaz:
https://doaj.org/article/9e4eabcbbc544226a9dbe9f4e67ba9b1
Autor:
Md Shamimuzzaman, Jack M. Gardiner, Amy T. Walsh, Deborah A. Triant, Justin J. Le Tourneau, Aditi Tayal, Deepak R. Unni, Hung N. Nguyen, John L. Portwood, Ethalinda K. S. Cannon, Carson M. Andorf, Christine G. Elsik
Publikováno v:
Frontiers in Plant Science, Vol 11 (2020)
MaizeMine is the data mining resource of the Maize Genetics and Genome Database (MaizeGDB; http://maizemine.maizegdb.org). It enables researchers to create and export customized annotation datasets that can be merged with their own research data for
Externí odkaz:
https://doaj.org/article/935a021f828f43fdac4026c1c4dfc41c
Autor:
Kyoung Tak Cho, John L. Portwood, Jack M. Gardiner, Lisa C. Harper, Carolyn J. Lawrence-Dill, Iddo Friedberg, Carson M. Andorf
Publikováno v:
Frontiers in Plant Science, Vol 10 (2019)
Background: An organism can be described by its observable features (phenotypes) and the genes and genomic information (genotypes) that cause these phenotypes. For many decades, researchers have tried to find relationships between genotypes and pheno
Externí odkaz:
https://doaj.org/article/bb54bbf213c74b689d2102ce9e6208ff
Autor:
Margaret R Woodhouse, John L Portwood, Shatabdi Sen, Rita K Hayford, Jack M Gardiner, Ethalinda K Cannon, Lisa C Harper, Carson M Andorf
Publikováno v:
GENETICS. 224
Protein structures play an important role in bioinformatics, such as in predicting gene function or validating gene model annotation. However, determining protein structure was, until now, costly and time-consuming, which resulted in a structural bio
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b44b684fc7ac8719b3798fd250e4ea8a
https://doi.org/10.1093/genetics/iyad016
https://doi.org/10.1093/genetics/iyad016
Autor:
Carson M Andorf, Shatabdi Sen, Rita K Hayford, John L Portwood, Ethalinda K Cannon, Lisa C Harper, Jack M Gardiner, Taner Z Sen, Margaret R Woodhouse
Methods to predict orthology play an important role in bioinformatics for phylogenetic analysis by identifying orthologs within or across any level of biological classification. Sequence-based reciprocal best hit approaches are commonly used in funct
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::3a58760c1007f31628a8674e39b3494c
https://doi.org/10.1101/2022.11.10.516002
https://doi.org/10.1101/2022.11.10.516002
Autor:
Carson M. Andorf, John L. Portwood, James C. Schnable, Margaret R. Woodhouse, David A. Schott, Michael Freeling, Justin W. Walley, Shatabdi Sen
Publikováno v:
Bioinformatics. 38:236-242
Motivation Over the last decade, RNA-Seq whole-genome sequencing has become a widely used method for measuring and understanding transcriptome-level changes in gene expression. Since RNA-Seq is relatively inexpensive, it can be used on multiple genom
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5f8deca5fd4b26026829b4cc87d70ace
https://doi.org/10.1093/bioinformatics/btab604
https://doi.org/10.1093/bioinformatics/btab604
Autor:
Jack M. Gardiner, Karen E. Koch, Jutta A. Baldauf, Donald R. McCarty, Frank Hochholdinger, Lena Altrogge, Caroline Marcon, Tyll G. Stöcker, Annika Kortz, John L. Portwood, Heiko Schoof, Yan Naing Win, Nina Opitz, Charles T. Hunter
Publikováno v:
Plant Physiol
Sequence-indexed insertional libraries in maize (Zea mays) are fundamental resources for functional genetics studies. Here, we constructed a Mutator (Mu) insertional library in the B73 inbred background designated BonnMu. A total of 1,152 Mu-tagged F
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e89a5c33aae462c0e6ff6cb8ab284208
https://doi.org/10.1104/pp.20.00478
https://doi.org/10.1104/pp.20.00478
Autor:
Ethalinda K. S. Cannon, Carson M. Andorf, Mary L. Schaeffer, Lisa C. Harper, John L. Portwood, Margaret R. Woodhouse, Jack M. Gardiner
Publikováno v:
BMC Plant Biology
BMC Plant Biology, Vol 21, Iss 1, Pp 1-10 (2021)
BMC Plant Biology, Vol 21, Iss 1, Pp 1-10 (2021)
Research in the past decade has demonstrated that a single reference genome is not representative of a species’ diversity. MaizeGDB introduces a pan-genomic approach to hosting genomic data, leveraging the large number of diverse maize genomes and
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::135c6f12cbbe7f8a0456e9a6d38e5467
https://pubmed.ncbi.nlm.nih.gov/34416864
https://pubmed.ncbi.nlm.nih.gov/34416864