Zobrazeno 1 - 10
of 169
pro vyhledávání: '"John H. Morris"'
Autor:
Maija Utriainen, John H. Morris
Publikováno v:
BMC Bioinformatics, Vol 24, Iss 1, Pp 1-28 (2023)
Abstract Background Since the initial publication of clusterMaker, the need for tools to analyze large biological datasets has only increased. New datasets are significantly larger than a decade ago, and new experimental techniques such as single-cel
Externí odkaz:
https://doaj.org/article/2b2a41d630a6418ea1cbc1904f7ed016
Publikováno v:
Frontiers in Bioinformatics, Vol 3 (2023)
Cytoscape is an open-source bioinformatics environment for the analysis, integration, visualization, and query of biological networks. In this perspective piece, we describe our project to bring the Cytoscape desktop application to the web while expl
Externí odkaz:
https://doaj.org/article/edbb24b9786640bfb61d4db22b10740e
Autor:
Jie Qu, Sarah Fourman, Maureen Fitzgerald, Min Liu, Supna Nair, Juan Oses-Prieto, Alma Burlingame, John H. Morris, W. Sean Davidson, Patrick Tso, Aditi Bhargava
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-14 (2021)
Abstract Apolipoprotein A4 (APOA4) is one of the most abundant and versatile apolipoproteins facilitating lipid transport and metabolism. APOA4 is synthesized in the small intestine, packaged onto chylomicrons, secreted into intestinal lymph and tran
Externí odkaz:
https://doaj.org/article/29e9cbef81184dac86a691bd4bd2d354
Autor:
Krishna Choudhary, Elaine C. Meng, J. Javier Diaz-Mejia, Gary D. Bader, Alexander R. Pico, John H. Morris
Publikováno v:
F1000Research, Vol 10 (2021)
Single-cell RNA-sequencing (scRNA-seq) has revolutionized molecular biology and medicine by enabling high-throughput studies of cellular heterogeneity in diverse tissues. Applying network biology approaches to scRNA-seq data can provide useful insigh
Externí odkaz:
https://doaj.org/article/d1b920056d384c8aa9941a2eb0afd0f1
Publikováno v:
Genome Biology, Vol 20, Iss 1, Pp 1-15 (2019)
Abstract Cytoscape is one of the most successful network biology analysis and visualization tools, but because of its interactive nature, its role in creating reproducible, scalable, and novel workflows has been limited. We describe Cytoscape Automat
Externí odkaz:
https://doaj.org/article/6c60a4e1188a429db808a8e867d64e3f
Publikováno v:
F1000Research, Vol 9 (2020)
Cytoscape is an open-source software used to analyze and visualize biological networks. In addition to being able to import networks from a variety of sources, Cytoscape allows users to import tabular node data and visualize it onto networks. Unfortu
Externí odkaz:
https://doaj.org/article/4edaef55cd0e4fa79d05f9fe022e9533
Publikováno v:
F1000Research, Vol 9 (2020)
Cytoscape is an open-source software used to analyze and visualize biological networks. In addition to being able to import networks from a variety of sources, Cytoscape allows users to import tabular node data and visualize it onto networks. Unfortu
Externí odkaz:
https://doaj.org/article/75ba6d1745e04862873fb8f775b6bd9c
Autor:
J. Javier Diaz-Mejia, Elaine C. Meng, Alexander R. Pico, Sonya A. MacParland, Troy Ketela, Trevor J. Pugh, Gary D. Bader, John H. Morris
Publikováno v:
F1000Research, Vol 8 (2019)
Background: Identification of cell type subpopulations from complex cell mixtures using single-cell RNA-sequencing (scRNA-seq) data includes automated steps from normalization to cell clustering. However, assigning cell type labels to cell clusters i
Externí odkaz:
https://doaj.org/article/25cf40df8e1541cc95186df61d5529c0
Autor:
J. Javier Diaz-Mejia, Elaine C. Meng, Alexander R. Pico, Sonya A. MacParland, Troy Ketela, Trevor J. Pugh, Gary D. Bader, John H. Morris
Publikováno v:
F1000Research, Vol 8 (2019)
Background: Identification of cell type subpopulations from complex cell mixtures using single-cell RNA-sequencing (scRNA-seq) data includes automated steps from normalization to cell clustering. However, assigning cell type labels to cell clusters i
Externí odkaz:
https://doaj.org/article/0def3835ecdf403a8ce61e0e86949cc6
Publikováno v:
F1000Research, Vol 4 (2015)
CyAnimator (http://apps.cytoscape.org/apps/cyanimator) is a Cytoscape app that provides a tool for simple animations of Cytoscape networks. The tool allows you to take a series of snapshots (CyAnimator calls them frames) of Cytoscape networks. For ex
Externí odkaz:
https://doaj.org/article/ba2b0dd997f7446f8f7df25b9f0f3cb8