Zobrazeno 1 - 10
of 12
pro vyhledávání: '"John H. Ipsen"'
Autor:
Weria Pezeshkian, John H. Ipsen
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-10 (2024)
Abstract We present FreeDTS software for performing computational research on biomembranes at the mesoscale. In this software, a membrane is represented by a dynamically triangulated surface equipped with vertex-based inclusions to integrate the effe
Externí odkaz:
https://doaj.org/article/05f8a7ba61d3428ea3d7c3049b043bc4
Publikováno v:
Biology, Vol 12, Iss 2, p 181 (2023)
The crowded interior of a living cell makes performing experiments on simpler in vitro systems attractive. Although these reveal interesting phenomena, their biological relevance can be questionable. A topical example is the phase separation of intri
Externí odkaz:
https://doaj.org/article/cd49f41db7324ea38b2281a5e7b61b84
Publikováno v:
Toxins, Vol 13, Iss 7, p 449 (2021)
Many bacteria secrete toxic protein complexes that modify and disrupt essential processes in the infected cell that can lead to cell death. To conduct their action, these toxins often need to cross the cell membrane and reach a specific substrate ins
Externí odkaz:
https://doaj.org/article/5e5bf6215cca4d58957ed51c545c955b
Publikováno v:
Frontiers in Molecular Biosciences, Vol 6 (2019)
We present a multi-scale simulation procedure to describe membrane-related biological processes that span over a wide range of length scales. At macroscopic length-scale, a membrane is described as a flexible thin film modeled by a dynamic triangulat
Externí odkaz:
https://doaj.org/article/e23b3dff5b054ed0aefe5092c02cc694
Publikováno v:
Biology Open, Vol 2, Iss 4, Pp 373-378 (2013)
Summary Changes in the physical properties of the lipid matrix of cell membranes have repeatedly been proposed to underlie stresses associated with e.g. drought, cold and xenobiotics. Therefore, the ability to experimentally monitor such properties i
Externí odkaz:
https://doaj.org/article/8ba8081e4aa84a98897f6ab855a4842e
Autor:
Weria Pezeshkian, John H. Ipsen
We present FreeDTS software for performing computational research on biomembranes at the mesoscale. In this model, a membrane is represented by a dynamically triangulated surface equipped with vertex-based inclusions to integrate the effects of integ
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::49fbf5d52236782bebf8066926aade4b
https://doi.org/10.1101/2023.05.05.539540
https://doi.org/10.1101/2023.05.05.539540
Publikováno v:
Biology; Volume 12; Issue 2; Pages: 181
Simple Summary The cytoplasm of a living cell is a crowded place, containing hundreds of types of protein and other macromolecules. Cells reliably and continually perform thousands of biochemical reactions to maintain their health. Biomolecular conde
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::67280b1257935f41c38c87fd131cfa35
https://doi.org/10.1101/2022.12.12.520052
https://doi.org/10.1101/2022.12.12.520052
Publikováno v:
Protocol Exchange.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::a18f8f5d388d4ab714b993453abd27e1
https://doi.org/10.1038/protex.2016.010
https://doi.org/10.1038/protex.2016.010
Autor:
Martin J, Zuckermann, John H, Ipsen, Ling, Miao, Ole G, Mouritsen, Morten, Nielsen, James, Polson, Jenifer, Thewalt, Ilpo, Vattulainen, Hong, Zhu
Publikováno v:
Methods in enzymology. 383
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::1cfce0c23ad9f945b8fe4f45acc0be59
https://pubmed.ncbi.nlm.nih.gov/15063652
https://pubmed.ncbi.nlm.nih.gov/15063652
Biomolecular condensates play numerous roles in cells by selectively concentrating client proteins while excluding others. These functions are likely to be sensitive to the spatial organization of the scaffold proteins forming the condensate. We use
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d4f0175e95ba9c87d9258bbe3ab62fa2
https://infoscience.epfl.ch/record/296629
https://infoscience.epfl.ch/record/296629