Zobrazeno 1 - 6
of 6
pro vyhledávání: '"John Fonner"'
Autor:
Tyson L Swetnam, Parker B Antin, Ryan Bartelme, Alexander Bucksch, David Camhy, Greg Chism, Illyoung Choi, Amanda M Cooksey, Michele Cosi, Cindy Cowen, Michael Culshaw-Maurer, Robert Davey, Sean Davey, Upendra Devisetty, Tony Edgin, Andy Edmonds, Dmitry Fedorov, Jeremy Frady, John Fonner, Jeffrey K Gillan, Iqbal Hossain, Blake Joyce, Konrad Lang, Tina Lee, Shelley Littin, Ian McEwen, Nirav Merchant, David Micklos, Andrew Nelson, Ashley Ramsey, Sarah Roberts, Paul Sarando, Edwin Skidmore, Jawon Song, Mary Margaret Sprinkle, Sriram Srinivasan, Dan Stanzione, Jonathan D Strootman, Sarah Stryeck, Reetu Tuteja, Matthew Vaughn, Mojib Wali, Mariah Wall, Ramona Walls, Liya Wang, Todd Wickizer, Jason Williams, John Wregglesworth, Eric Lyons
Publikováno v:
PLoS Computational Biology, Vol 20, Iss 2, p e1011270 (2024)
CyVerse, the largest publicly-funded open-source research cyberinfrastructure for life sciences, has played a crucial role in advancing data-driven research since the 2010s. As the technology landscape evolved with the emergence of cloud computing pl
Externí odkaz:
https://doaj.org/article/1356553c72cc4571a1e895ffbd6963c1
Publikováno v:
2021 3rd International Workshop on Containers and New Orchestration Paradigms for Isolated Environments in HPC (CANOPIE-HPC).
Autor:
Inimary Toby, Scott Christley, Walter Scarborough, William H Rounds, John Fonner, Stephen Mock, Nancy Monson, Richard H Scheuermann, Lindsay G Cowell
Publikováno v:
The Journal of Immunology. 198:55.49-55.49
VDJServer is a comprehensive, web-accessible system for analysis of immune repertoire sequencing data. VDJServer provides a complete analysis workflow from pre-processing of sequence reads, to V(D)J assignment, to repertoire characterization and comp
Autor:
Inimary Toby, Felix Breden, Adam Buntzman, Scott Christley, Brian Corrie, John Fonner, Namita Gupta, Uri Hershberg, Chris Jordan, Min S Kim, Steven Kleinstein, Nishanth Marthandan, Stephen Mock, Nancy Monson, William H Rounds, Manual Rojas, Aaron Rosenfeld, Florian Rubelt, Walter Scarborough, Richard H Scheuermann, Jamie Scott, Mohamed Uduman, Jason Vander Heiden, Lindsay G Cowell
Publikováno v:
The Journal of Immunology. 196:209.24-209.24
Despite the widespread use of immune repertoire profiling, there is currently no standardized format for output files from VDJ analysis. Researchers utilize software such as IgBlast and IMGT/High V-Quest to perform VDJ analysis and infer germline rea
Autor:
Scott Christley, Mikhail Levin, John Fonner, Nancy Monson, William H Rounds, Florian Rubelt, Walter Scarborough, Richard H Scheuermann, Inimary Toby, Lindsay G Cowell
Publikováno v:
The Journal of Immunology. 196:209.26-209.26
Pre-processing of high-throughput sequencing data for immune repertoire profiling is essential to insure high quality input for downstream analysis. VDJPipe is a flexible, high-performance tool that can perform multiple pre-processing tasks with just
Autor:
Lindsay Cowell, John Fonner, Christopher Jordan, Mikhail Levin, Stephen Mock, Nancy Monson, William Rounds, Edward Salinas, Walter Scarborough, Richard Scheuermann
Publikováno v:
The Journal of Immunology. 194:52.42-52.42
Despite the importance and widespread application of detailed antigen receptor repertoire profiling via high-throughput sequencing, there is currently no suite of software tools for seamless, reproducible analysis of repertoire sequence data. Tools e