Genomic CG dinucleotide deficiencies associated with transposable element hypermutation in Basidiomycetes, some lower fungi, a moss and a clubmoss

Autor: A. John Clutterbuck

Publikováno v: Fungal Genetics and Biology. 104:16-28

Many Basidiomycete genomes include substantial fractions that are deficient in CG dinucleotides, in extreme cases amounting to 70% of the genome. CG deficiency is variable and correlates with genome size and, more closely, with transposable element (

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0276ac6a126f3cf9ed846a6408ad3246
https://doi.org/10.1016/j.fgb.2017.04.005

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae

Autor: Toshitaka Kumagai, Kay Vienken, Li-Jun Ma, Toshihiro Tanaka, Christina C. Spevak, Paul S. Dyer, Mark L. Farman, Jerzy Jurka, David B. Archer, Claudio Scazzocchio, Christiane Bouchier, Miguel A. Peñalva, Gerhard H. Braus, John H. Doonan, Arnab Pain, Kiyoshi Asai, Eric U. Selker, Reinhard Fischer, James E. Galagan, Seth Purcell, William C. Nierman, Oliver W. Draht, Michelle Momany, Jennifer R. Wortman, Deborah Bell-Pedersen, Bruce W. Birren, Berl R. Oakley, Christina A. Cuomo, David W. Denning, Michael J. Hynes, Jonathan Butler, Su-In Lee, John Clutterbuck, Jae-Hyuk Yu, Christophe d'Enfert, Vladimir V. Kapitonov, Steve Harris, Gustavo H. Goldman, Masayuki Machida, Serafim Batzoglou, Sarah E. Calvo, Mathieu Paoletti, Bruce L. Miller, Matthew S. Sachs, Mark X. Caddick, Silke Busch, Meray Baştürkmen, Michael Freitag, Sam Griffiths-Jones, Stephen A. Osmani

Publikováno v: Nature
Nature, Nature Publishing Group, 2005, 438 (7071), pp.1105-1115. ⟨10.1038/nature04341⟩
Nature, 2005, 438 (7071), pp.1105-1115. ⟨10.1038/nature04341⟩

International audience; The aspergilli comprise a diverse group of filamentous fungi spanning over 200 million years of evolution. Here we report the genome sequence of the model organism Aspergillus nidulans, and a comparative study with Aspergillus

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1c9c31c34471cf5b57d5e81cf480f8b7
https://doi.org/10.1038/nature04341

MATE transposable elements in Aspergillus nidulans: evidence of repeat-induced point mutation

Autor: A. John Clutterbuck

Publikováno v: Fungal Genetics and Biology. 41:308-316

The sequences of five MATE transposable elements were retrieved from the Aspergillus nidulans genome sequence. These elements are 6.1 kb in length and are characterized by 9-10 bp target site duplications, paired approximately 40 bp palindromes close

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f491d8155229a39682b25dd7a99261d8
https://doi.org/10.1016/j.fgb.2003.11.004

Transposable Elements and Repeat-Induced Point Mutation

Autor: Eric U. Selker, A. John Clutterbuck

This chapter concentrates on the impact of repeat-induced point mutation (RIP) on transposable elements (TEs). It is clear that RIP does not follow an identical pattern in all fungi: whereas RIP in Neurospora crassa is intense enough to reduce the C+

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::869d27e0fa89e57d2cf0f5c47fc687db
https://doi.org/10.1128/9781555816636.ch10

FGN 46 Aspergillus Bibliography

Autor: John Clutterbuck

Publikováno v: Fungal Genetics Reports. 46:34-41

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::ab67d06a1a7ba379effed137c09a4028
https://doi.org/10.4148/1941-4765.1244