Zobrazeno 1 - 10
of 37
pro vyhledávání: '"John C. Mu"'
Autor:
Jian Li, Bernie Chu, Priyanka Rao, Shuba Krishna, Vivian Douglas, Caitlin Schartner, Lili Niu, Kalpana Kannan, Fnu Kinshuk, John C. Mu, Nicole Greene
Publikováno v:
Cancer Research. 81:169-169
Accurate and comprehensive interpretation of genomic variants has become a bottleneck in clinical sequencing applications due to the implementation of precision oncology and the growth of biomedical findings. We therefore were motivated to build Ephe
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::8e6416694c82e04e04920969c620fe02
https://doi.org/10.1158/1538-7445.am2021-169
https://doi.org/10.1158/1538-7445.am2021-169
Autor:
Michael J. Jowers, Utpal Smart, Santiago Sánchez-Ramírez, John C. Murphy, Aarón Gómez, Renan J. Bosque, Goutam C. Sarker, Brice P. Noonan, J. Filipe Faria, D. James Harris, Nelson Jorge da Silva, Ana L. C. Prudente, John Weber, Philippe J. R. Kok, Gilson A. Rivas, Robert C. Jadin, Mahmood Sasa, Antonio Muñoz-Mérida, Gregorio Moreno-Rueda, Eric N. Smith
Publikováno v:
Scientific Reports, Vol 13, Iss 1, Pp 1-11 (2023)
Abstract Coralsnakes of the genus Micrurus are a diverse group of venomous snakes ranging from the southern United States to southern South America. Much uncertainty remains over the genus diversity, and understanding Micrurus systematics is of medic
Externí odkaz:
https://doaj.org/article/36e7ee3509db4312a9bc009969d99ca5
Autor:
Fnu Kinshuk, Bernie Chu, Priyanka Rao, Nicole Greene, Shuba Krishna, Jian Li, Caitlin Schartner, John C. Mu, Vivian Douglas, Andi Broka, Lili Niu, Austin Doupnik, Marghoob Mohiyuddin
Publikováno v:
Journal of Clinical Oncology. 38:e14074-e14074
e14074 Background: Accurate and comprehensive interpretation of genomic variants has become a bottleneck in clinical sequencing applications due to the accelerated implementation of precision oncology and the rapid growth of relevant biomedical findi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::4560f812671050752c894319452f4fa3
https://doi.org/10.1200/jco.2020.38.15_suppl.e14074
https://doi.org/10.1200/jco.2020.38.15_suppl.e14074
Autor:
Lodewyk F. A. Wessels, Jan O. Korbel, Jasmijn A. Baaijens, Francesca Chiaromonte, Gunnar W. Klau, Kai Ye, Alexander Schönhuth, Francesca D. Ciccarelli, Tobias Marschall, Robin Cijvat, Matthias Schlesner, Adam M. Novak, Eleazar Eskin, Ashley D. Sanders, Sven Rahmann, Carl Shneider, Wigard P. Kloosterman, Knut Reinert, Eric-Wubbo Lameijer, Sandra Smit, Benedict Paten, Mohammed El-Kebir, Valentina Boeva, Evan E. Eichler, Cornelia M. van Duijn, Can Alkan, Jeroen de Ridder, Benjamin Langmead, Dick de Ridder, Jiayin Wang, David Porubsky, Fabio Vandin, Erwin Datema, Ben Raphael, Paul Kersey, Nadia Pisanti, Corinna Ernst, Klaasjan G. Ouwens, Y. Zhang, Thomas Abeel, Erik Garrison, Veli Mäkinen, Paul I.W. de Bakker, Victor Guryev, Siavash Sheikhizadeh, Manja Marz, Marcel Martin, Ole Schulz-Trieglaff, Pieter B. Neerincx, Rayan Chikhi, Eric Rivals, John C. Mu, Raoul J. P. Bonnal, Bas E. Dutilh, Paul Medvedev, Louis Dijkstra, Pierre Peterlongo, Ali Ghaffaari, Daniel Valenzuela
Publikováno v:
Briefings in Bioinformatics, 19(1), 118-135. Oxford University Press
Briefings in Bioinformatics, 19, 118-135
Briefings in Bioinformatics
Briefings in Bioinformatics, 19(1). Oxford University Press
Briefings in Bioinformatics, 19(1), 118-135
Briefings in Bioinformatics, Oxford University Press (OUP), 2018, 19 (1), pp.118-135. ⟨10.1093/bib/bbw089⟩
Briefings in Bioinformatics, Oxford University Press (OUP), 2018, 19 (1), pp.118-135. 〈10.1093/bib/bbw089〉
Briefings in Bioinformatics, 19, 1, pp. 118-135
Briefings in Bioinformatics, 2018, 19 (1), pp.118-135. ⟨10.1093/bib/bbw089⟩
Briefings in Bioinformatics 19 (2018) 1
Briefings in Bioinformatics, 19, 118-135
Briefings in Bioinformatics
Briefings in Bioinformatics, 19(1). Oxford University Press
Briefings in Bioinformatics, 19(1), 118-135
Briefings in Bioinformatics, Oxford University Press (OUP), 2018, 19 (1), pp.118-135. ⟨10.1093/bib/bbw089⟩
Briefings in Bioinformatics, Oxford University Press (OUP), 2018, 19 (1), pp.118-135. 〈10.1093/bib/bbw089〉
Briefings in Bioinformatics, 19, 1, pp. 118-135
Briefings in Bioinformatics, 2018, 19 (1), pp.118-135. ⟨10.1093/bib/bbw089⟩
Briefings in Bioinformatics 19 (2018) 1
Many disciplines, from human genetics and oncology to plant breeding, microbiology and virology, commonly face the challenge of analyzing rapidly increasing numbers of genomes. In case ofHomo sapiens, the number of sequenced genomes will approach hun
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::302b4b6d3da2df08953959b0850432fb
https://www.scopus.com/inward/record.url?partnerID=HzOxMe3b&origin=inward&scp=85041170263
https://www.scopus.com/inward/record.url?partnerID=HzOxMe3b&origin=inward&scp=85041170263
Autor:
Marghoob Mohiyuddin, Wing Hung Wong, Jian Li, John C. Mu, Alexej Abyzov, Hugo Y. K. Lam, Narges Bani Asadi, Mark Gerstein
Publikováno v:
Bioinformatics
Summary: Structural variations (SVs) are large genomic rearrangements that vary significantly in size, making them challenging to detect with the relatively short reads from next-generation sequencing (NGS). Different SV detection methods have been d
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a66f69c256949ba5ce52043b702a403a
https://doi.org/10.1093/bioinformatics/btv204
https://doi.org/10.1093/bioinformatics/btv204
Autor:
Bayo Lau, John C. Mu, Marghoob Mohiyuddin, Narges Bani Asadi, Carolina Dallett, Li Tai Fang, Hugo Y. K. Lam
Publikováno v:
Bioinformatics
Summary: LongISLND is a software package designed to simulate sequencing data according to the characteristics of third generation, single-molecule sequencing technologies. The general software architecture is easily extendable, as demonstrated by th
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6f85364e0b9d0d800e0c807343ae46bf
https://pubmed.ncbi.nlm.nih.gov/27667791
https://pubmed.ncbi.nlm.nih.gov/27667791
Optional Polya tree (OPT) is a flexible nonparametric Bayesian prior for density estimation. Despite its merits, the computation for OPT inference is challenging. In this paper we present time complexity analysis for OPT inference and propose two alg
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::22a7cc2335ba380d2463f06936582d7d
https://europepmc.org/articles/PMC4874344/
https://europepmc.org/articles/PMC4874344/
Autor:
Wing Hung Wong, Narges Bani Asadi, Mark Gerstein, Xi Chen, Marghoob Mohiyuddin, John C. Mu, Hugo Y. K. Lam, Pegah Tootoonchi Afshar, Jian Li
Publikováno v:
Scientific Reports
A high-confidence, comprehensive human variant set is critical in assessing accuracy of sequencing algorithms, which are crucial in precision medicine based on high-throughput sequencing. Although recent works have attempted to provide such a resourc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::84a35e80a66a5031cca33221fff9732e
Autor:
Narges Bani Asadi, Marghoob Mohiyuddin, John C. Mu, Daniel C. Koboldt, Greg Gibeling, Aparna Chhibber, Yu Fan, Mark Gerstein, Li Tai Fang, Wing Hung Wong, Wenyi Wang, Pegah Tootoonchi Afshar, Sharon Y. Barr, Hugo Y. K. Lam
Publikováno v:
Genome Biology
SomaticSeq is an accurate somatic mutation detection pipeline implementing a stochastic boosting algorithm to produce highly accurate somatic mutation calls for both single nucleotide variants and small insertions and deletions. The workflow currentl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::921d41e7f48d258d05704f50e0021a8f
https://doi.org/10.1186/s13059-015-0758-2
https://doi.org/10.1186/s13059-015-0758-2
Autor:
Michael J. Jowers, Yuri Simone, Anthony Herrel, M. Pilar Cabezas, Raquel Xavier, Magaly Holden, Renaud Boistel, John C. Murphy, Mathieu Santin, Stephane Caut, Renoir J. Auguste, Arie van der Meijden, Franco Andreone, Ivan Ineich
Publikováno v:
Scientific Reports, Vol 12, Iss 1, Pp 1-9 (2022)
Abstract Natural history museum collections hold extremely rare, extinct species often described from a single known specimen. On occasions, rediscoveries open new opportunities to understand selective forces acting on phenotypic traits. Recent redis
Externí odkaz:
https://doaj.org/article/735f7f555d224e1dab38e7d4baeebd94