Zobrazeno 1 - 10
of 73
pro vyhledávání: '"John C, Matese"'
Autor:
Estienne C Swart, John R Bracht, Vincent Magrini, Patrick Minx, Xiao Chen, Yi Zhou, Jaspreet S Khurana, Aaron D Goldman, Mariusz Nowacki, Klaas Schotanus, Seolkyoung Jung, Robert S Fulton, Amy Ly, Sean McGrath, Kevin Haub, Jessica L Wiggins, Donna Storton, John C Matese, Lance Parsons, Wei-Jen Chang, Michael S Bowen, Nicholas A Stover, Thomas A Jones, Sean R Eddy, Glenn A Herrick, Thomas G Doak, Richard K Wilson, Elaine R Mardis, Laura F Landweber
Publikováno v:
PLoS Biology, Vol 11, Iss 1, p e1001473 (2013)
The macronuclear genome of the ciliate Oxytricha trifallax displays an extreme and unique eukaryotic genome architecture with extensive genomic variation. During sexual genome development, the expressed, somatic macronuclear genome is whittled down t
Externí odkaz:
https://doaj.org/article/2c997db6921e48499101458b87b25641
Autor:
Catherine A Ball, Alvis Brazma, Helen Causton, Steve Chervitz, Ron Edgar, Pascal Hingamp, John C Matese, Helen Parkinson, John Quackenbush, Martin Ringwald, Susanna-Assunta Sansone, Gavin Sherlock, Paul Spellman, Chris Stoeckert, Yoshio Tateno, Ronald Taylor, Joseph White, Neil Winegarden
Publikováno v:
PLoS Biology, Vol 2, Iss 9, p E317 (2004)
Externí odkaz:
https://doaj.org/article/2243f90a410241aa923c3a9d632ce059
Autor:
Chen, Cao, Laurence A, Lemaire, Wei, Wang, Peter H, Yoon, Yoolim A, Choi, Lance R, Parsons, John C, Matese, Michael, Levine, Kai, Chen
Publikováno v:
Nature. 571(7765)
Ascidian embryos highlight the importance of cell lineages in animal development. As simple proto-vertebrates, they also provide insights into the evolutionary origins of cell types such as cranial placodes and neural crest cells. Here we have determ
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::e2206eda1b924b3c3ee37d544e52e069
https://pubmed.ncbi.nlm.nih.gov/31308528
https://pubmed.ncbi.nlm.nih.gov/31308528
Publikováno v:
G3: Genes|Genomes|Genetics
The genome of budding yeast (Saccharomyces cerevisiae) contains approximately 5800 protein-encoding genes, the majority of which are associated with some known biological function. Yet the extent of amino acid sequence conservation of these genes ove
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a6df5db9187457e90d6998509ef6aac9
https://doi.org/10.1534/g3.113.006585
https://doi.org/10.1534/g3.113.006585
Autor:
David Botstein, Olga G. Troyanskaya, Rachel Rosenstein, David Gresham, Viktor Marius Boer, Matthew J. Brauer, Edoardo M. Airoldi, John C. Matese, Curtis Huttenhower
Publikováno v:
Molecular Biology of the Cell. 19:352-367
We studied the relationship between growth rate and genome-wide gene expression, cell cycle progression, and glucose metabolism in 36 steady-state continuous cultures limited by one of six different nutrients (glucose, ammonium, sulfate, phosphate, u
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e542e29adaf0a12097985e7ae529bd68
https://doi.org/10.1091/mbc.e07-08-0779
https://doi.org/10.1091/mbc.e07-08-0779
Autor:
Gavin Sherlock, Donald Maier, Catherine A. Ball, Michael Nitzberg, Catherine C Beauheim, Tina Hernandez-Boussard, Heng Jin, Zachariah K. Zachariah, Farrell Wymore, Janos Demeter, Patrick O. Brown, John C. Matese, Jeremy Gollub
Publikováno v:
Nucleic Acids Research
The Stanford Microarray Database (SMD; http://smd. stanford.edu/) is a research tool and archive that allows hundreds of researchers worldwide to store, annotate, analyze and share data generated by microarray technology. SMD supports most major micr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fd443f9fe138d47e21a33d08f2cac8c0
https://doi.org/10.1093/nar/gkl1019
https://doi.org/10.1093/nar/gkl1019
Autor:
Maximilian Diehn, David Botstein, Patrick O. Brown, Tina Hernandez-Boussard, Gavin Sherlock, Gail Binkley, Heng Jin, Christian A. Rees, Ash A. Alizadeh, J. Michael Cherry, John C. Matese
Publikováno v:
Nucleic Acids Research. 31:219-223
The explosion in the number of functional genomic datasets generated with tools such as DNA microarrays has created a critical need for resources that facilitate the interpretation of large-scale biological data. SOURCE is a web-based database that b
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ab39ee946f0d99c9b42d25185005e75a
https://doi.org/10.1093/nar/gkg014
https://doi.org/10.1093/nar/gkg014
Autor:
Helen Parkinson, Pascal Hingamp, John C. Matese, Frank C. P. Holstege, Patrick Glenisson, Helen C. Causton, Gavin Sherlock, Ronald C. Taylor, Alan J. Robinson, Chris Stoeckert, Steffen Schulze-Kremer, Terry Gaasterland, John Aach, Irene F. Kim, Catherine A. Ball, John Quackenbush, Martin Vingron, Paul T. Spellman, Wilhelm Ansorge, Jaak Vilo, Jason E. Stewart, Victor Markowitz, Alvis Brazma, Ugis Sarkans
Publikováno v:
Nature Genetics. 29:365-371
Microarray analysis has become a widely used tool for the generation of gene expression data on a genomic scale. Although many significant results have been derived from microarray studies, one limitation has been the lack of standards for presenting
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::97b9fbb5890ae849c5312d7faa85db39
https://doi.org/10.1038/ng1201-365
https://doi.org/10.1038/ng1201-365
Autor:
Hilde Johnsen, Charles M. Perou, Patrick O. Brown, Stephanie Geisler, John C. Matese, Turid Aas, Per Eystein Lønning, Stefanie S. Jeffrey, Robert Tibshirani, David Botstein, Michael B. Eisen, Therese Sørlie, Hanne Quist, Anne Lise Børresen-Dale, T. Thorsen, Matt van de Rijn, Trevor Hastie
Publikováno v:
Proceedings of the National Academy of Sciences. 98:10869-10874
The purpose of this study was to classify breast carcinomas based on variations in gene expression patterns derived from cDNA microarrays and to correlate tumor characteristics to clinical outcome. A total of 85 cDNA microarray experiments representi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c3df20a40544fbfeb5935975333b7425
https://doi.org/10.1073/pnas.191367098
https://doi.org/10.1073/pnas.191367098
Autor:
Gavin Sherlock, Midori A. Harris, Allan Peter Davis, Laurie Issel-Tarver, Joel E. Richardson, J.T. Eppig, David P. Hill, Kara Dolinski, J. M. Cherry, M Ashburner, Suzanna E. Lewis, Heather Butler, Judith A. Blake, Selina S. Dwight, Gerald M. Rubin, John C. Matese, M. Ringwald, David Botstein, Catherine A. Ball, Andrew Kasarskis
Publikováno v:
Nature Genetics. 25:25-29
Genomic sequencing has made it clear that a large fraction of the genes specifying the core biological functions are shared by all eukaryotes. Knowledge of the biological role of such shared proteins in one organism can often be transferred to other
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fd3b0f57a4dfb69afb5f6b8c5df2e545
https://doi.org/10.1038/75556
https://doi.org/10.1038/75556