VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center

Autor: Jamie Long, Sheena Shah Tomko, Susanne Warrenfeltz, Kristopher Lamoureux, Mary Ann McDowell, Brett Fox, Ulrike Böhme, Mark J Hickman, Steve Fisher, David Starns, George K. Christophides, Ana Barreto, Ann Sizemore Blevins, David S. Roos, Daniel Lawson, Lin Xu, Jie Zheng, John Judkins, Kristina Davis, Ryan Doherty, Jeremy D. DeBarry, Jaroslaw Nabrzyski, Lahcen I. Campbell, Samuel S. C. Rund, Evelina Y. Basenko, Beatrice Amos, Dave Falke, Mikkel B. Christensen, Stephanie Wever Schulman, Robert Wieck, Michael J. Dunn, Gareth Maslen, Mark X. Caddick, Haiming Wang, Robert Belnap, Wei Li, Christiane Hertz-Fowler, Achchuthan Shanmugasundram, Kathryn Crouch, Sarah A. Kelly, Wojciech Bażant, Sufen Hu, Bindu Gajria, Christian J. Stoeckert, Elizabeth Harper, Jay C. Humphrey, Jessica C. Kissinger, Paul A Wilkinson, Yikun Duan, Brian P. Brunk, John Brestelli, Matthieu Barba, Robert M. MacCallum, Kallie Lies, Omar S. Harb, Vasily Sitnik, Paul Flicek, Andrew M. Jones, Disha Lodha, Gloria I. Giraldo-Calderón, John Iodice, Danielle Callan, Drew Spruill, Cristina Aurrecoechea, Connor Howington, Dae Kun Kwon

Publikováno v: NUCLEIC ACIDS RESEARCH
Nucleic Acids Research
Amos, B, Aurrecoechea, C, Barba, M, Barreto, A, Basenko, E Y, Bażant, W, Belnap, R, Blevins, A S, Böhme, U, Brestelli, J, Brunk, B P, Caddick, M, Callan, D, Campbell, L, Christensen, M B, Christophides, G K, Crouch, K, Davis, K, Debarry, J, Doherty, R, Duan, Y, Dunn, M, Falke, D, Fisher, S, Flicek, P, Fox, B, Gajria, B, Giraldo-Calderón, G I, Harb, O S, Harper, E, Hertz-Fowler, C, Hickman, M J, Howington, C, Hu, S, Humphrey, J, Iodice, J, Jones, A, Judkins, J, Kelly, S A, Kissinger, J C, Kwon, D K, Lamoureux, K, Lawson, D, Li, W, Lies, K, Lodha, D, Long, J, MacCallum, R M, Maslen, G, McDowell, M A, Nabrzyski, J, Roos, D S, Rund, S S C, Schulman, S W, Shanmugasundram, A, Sitnik, V, Spruill, D, Starns, D, Stoeckert, C J, Tomko, S S, Wang, H, Warrenfeltz, S, Wieck, R, Wilkinson, P A, Xu, L & Zheng, J 2022, ' VEuPathDB : The eukaryotic pathogen, vector and host bioinformatics resource center ', Nucleic Acids Research, vol. 50, no. D1 . https://doi.org/10.1093/nar/gkab929

The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB, https://veupathdb.org) represents the 2019 merger of VectorBase with the EuPathDB projects. As a Bioinformatics Resource Center funded by the National Institutes of Health, wit

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3e18d51670b3121a959cb0e4c2478f0b
http://livrepository.liverpool.ac.uk/3142948/1/gkab929.pdf

MicrobiomeDB: a systems biology platform for integrating, mining and analyzing microbiome experiments

Autor: Jessica C. Kissinger, John Iodice, Cristina Aurrecoechea, Francislon Silva de Oliveira, John Brestelli, Jie Zheng, Steve Fisher, Shon Cade, Brian P. Brunk, David S. Roos, Gabriel Fernandes, Daniel P. Beiting, Christian J. Stoeckert

Publikováno v: Nucleic Acids Research

MicrobiomeDB (http://microbiomeDB.org) is a data discovery and analysis platform that empowers researchers to fully leverage experimental variables to interrogate microbiome datasets. MicrobiomeDB was developed in collaboration with the Eukaryotic Pa

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::700a4bca0865cffb97efabbf5aea387c

AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species

Autor: Wei Li, Christian J. Stoeckert, Brian P. Brunk, Ganesh Srinivasamoorthy, Mark Heiges, Deborah F. Pinney, Vishal Nayak, John Iodice, Elisabet Caler, Alan R. Gingle, Cary Pennington, Ana Barreto, John Brestelli, Charles Treatman, Haiming Wang, David S. Roos, Steve Fischer, Jessica C. Kissinger, Cristina Aurrecoechea, Omar S. Harb, Bindu Gajria, Brian Pitts, Eileen Kraemer, Xin Gao, Gregory R. Grant

Publikováno v: Nucleic Acids Research

AmoebaDB (http://AmoebaDB.org) and MicrosporidiaDB (http://MicrosporidiaDB.org) are new functional genomic databases serving the amoebozoa and microsporidia research communities, respectively. AmoebaDB contains the genomes of three Entamoeba species

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::13da4d47498cc92fc9f6e6df2bc4868b
https://doi.org/10.1093/nar/gkq1006

GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis

Autor: Cristina Aurrecoechea, Frank Innamorato, David S. Roos, Alan R. Gingle, Jane M. Carlton, Christian J. Stoeckert, Charles Treatman, Gregory R. Grant, Cary Pennington, Deborah F. Pinney, Jessica C. Kissinger, Omar S. Harb, Haiming Wang, Steve Fischer, John Brestelli, Mark Heiges, Vishal Nayak, John Iodice, Chris Ross, Brian P. Brunk, Hilary G. Morrison, Bindu Gajria, John A. Miller, Eileen Kraemer, Jennifer Dommer, Xin Gao, Wei Li, Steven A. Sullivan

Publikováno v: Nucleic Acids Research

GiardiaDB (http://GiardiaDB.org) and TrichDB (http://TrichDB.org) house the genome databases for Giardia lamblia and Trichomonas vaginalis, respectively, and represent the latest additions to the EuPathDB (http://EuPathDB.org) family of functional ge

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4338737e4b5c2bba8ca9cfd73a74fe54
https://doi.org/10.1093/nar/gkn631

EPConDB: a web resource for gene expression related to pancreatic development, beta-cell function and diabetes

Autor: Regina K. Gorski, Peter White, Elisabetta Manduchi, Christian J. Stoeckert, John Brestelli, Jonathan Schug, Joan M. Mazzarelli, Klaus H. Kaestner, Junmin Liu, Deborah F. Pinney

Publikováno v: Nucleic Acids Research

EPConDB (http://www.cbil.upenn.edu/EPConDB) is a public web site that supports research in diabetes, pancreatic development and beta-cell function by providing information about genes expressed in cells of the pancreas. EPConDB displays expression pr

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bf8e71e094962097c74c76d48798e2f3
https://doi.org/10.1093/nar/gkl748