Zobrazeno 1 - 6
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pro vyhledávání: '"John Besemer"'
Autor:
John Besemer, Mark Borodovsky
Publikováno v:
Nucleic Acids Research
The task of gene identification frequently confronting researchers working with both novel and well studied genomes can be conveniently and reliably solved with the help of the GeneMark web software (http://opal.biology.gatech.edu/GeneMark/). The web
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0130cd8f093a8815dd22ce3a20302515
http://europepmc.org/articles/PMC1160247
http://europepmc.org/articles/PMC1160247
Autor:
Angela G. King, Sorel Fitz-Gibbon, Malgorzata M. Slupska, John Besemer, Jeffrey H Miller, Mark Borodovsky
Publikováno v:
Journal of Molecular Biology. 309:347-360
We mapped transcription start sites for ten unrelated protein-encoding Pyrobaculum aerophilum genes by primer extension and S 1 nuclease mapping. All of the mapped transcripts start at the computationally predicted translation start codons, two of wh
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e3c2d1cd69184b82f9062b4e0c527216
https://doi.org/10.1006/jmbi.2001.4669
https://doi.org/10.1006/jmbi.2001.4669
Publikováno v:
Nucleic acids research. 29(12)
Improving the accuracy of prediction of gene starts is one of a few remaining open problems in computer prediction of prokaryotic genes. Its difficulty is caused by the absence of relatively strong sequence patterns identifying true translation initi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::32a4bce01a084a72181e6887686f0536
https://pubmed.ncbi.nlm.nih.gov/11410670
https://pubmed.ncbi.nlm.nih.gov/11410670
Autor:
Mark Borodovsky, Ambrose Jong, John Besemer, Yu Hua Chen, Sheng-He Huang, Guoying Kong, Steven Chen
Publikováno v:
Functionalintegrative genomics. 1(5)
The IbeA (ibe10) gene is an invasion determinant contributing to E. coli K1 invasion of the blood-brain barrier. This gene has been cloned and characterized from the chromosome of an invasive cerebrospinal fluid isolate of E. coli K1, strain RS218 (0
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c7161a217b5dbf45d8b5fb715346c830
https://pubmed.ncbi.nlm.nih.gov/11793250
https://pubmed.ncbi.nlm.nih.gov/11793250
Autor:
Mark Borodovsky, John Besemer
Publikováno v:
Nucleic acids research. 27(19)
Computer methods of accurate gene finding in DNA sequences require models of protein coding and non-coding regions derived either from experimentally validated training sets or from large amounts of anonymous DNA sequence. Here we propose a new, heur
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6c707a422e1e4dbeff3b3ef432e6d89f
https://pubmed.ncbi.nlm.nih.gov/10481031
https://pubmed.ncbi.nlm.nih.gov/10481031
Publikováno v:
Current Protocols in Bioinformatics
In this unit, the GeneMark and GeneMark.hmm programs are presented as two different methods for the in silico prediction of genes in prokaryotes. GeneMark can be used for whole genome analysis as well as for the local analysis of a particular gene an
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a98cce8c520145f6c2d8869bf44b8d04
https://doi.org/10.1002/0471250953.bi0405s01
https://doi.org/10.1002/0471250953.bi0405s01