Zobrazeno 1 - 10
of 11
pro vyhledávání: '"Johanna F.B. Pagano"'
Autor:
Johanna F.B. Pagano, Han Rauwerda, Wim C. de Leeuw, Paul Wackers, Mark de Jong, Wim Ensink, Rob Dekker, Ulrike Nehrdich, Herman P. Spaink, Martijs Jonker, Timo M. Breit
Publikováno v:
Data in Brief, Vol 8, Iss , Pp 69-72 (2016)
Maternal mRNA that is present in the mature oocyte plays an important role in the proper development of the early embryo. To elucidate the role of the maternal transcriptome we recently reported a microarray study on individual zebrafish eggs from fi
Externí odkaz:
https://doaj.org/article/04b0bf32654a4810ba8c720532c6e203
Autor:
Han Rauwerda, Johanna F.B. Pagano, Wim C. de Leeuw, Wim Ensink, Marina van Olst, Ulrike Nehrdich, Martijs J. Jonker, Herman P. Spaink, Timo M. Breit
At gastrulation in the zebrafish embryogenesis, the embryonic genome is switched on to produce transcripts that are used for the maintenance and development of the embryo. In a previous study from late blastula to mid gastrula on the transcriptomes o
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::97b466851ff21f7c678adff59163f10d
https://doi.org/10.1101/2022.09.29.510050
https://doi.org/10.1101/2022.09.29.510050
Autor:
Johanna F.B. Pagano, J. Rauwerda, Wim A. Ensink, R.J. Dekker, Herman P. Spaink, Ulrike Nehrdich, Timo M. Breit
Cellular translation is essential to all life on earth and in recent years we have reported on the discovery of a unique dual translation system in zebrafish. In this system, a maternal-type variant shows absolute expression in eggs and is progressiv
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f3a78d7703bc724dcce1855bbbab898f
https://doi.org/10.1101/2020.01.31.928739
https://doi.org/10.1101/2020.01.31.928739
New observations on non-coding RNAs involved in the dual translation system in zebrafish development
Autor:
Timo M. Breit, M. van Olst, Herman P. Spaink, Ulrike Nehrdich, R.J. Dekker, Han Rauwerda, E. Mittring, S. van Leeuwen, P.L. van der Jagt, Johanna F.B. Pagano, Wim A. Ensink, W.C. de Leeuw
Cellular translation relies heavily on the involvements of several types of non-coding RNAs. In previous studies we have identified a dual translation system in zebrafish development, involving maternal-type and somatic-type rRNAs, snoRNAs, and snRNA
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::08d24f9f77277ac87df0c92b6927c836
Autor:
S. van Leeuwen, M. van Olst, Herman P. Spaink, Martijs J. Jonker, Wim A. Ensink, W.C. de Leeuw, Han Rauwerda, A. Bos, R.J. Dekker, Johanna F.B. Pagano, Ulrike Nehrdich, Timo M. Breit
Splicing removes intronic RNA sequences from pre-mRNA molecules and enables, by alternative splicing, the generation of multiple unique RNA molecules from a single gene. As such, splicing is an essential part of the whole translation system of a cell
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::da394a7defa339be9bce98cac5a9e21d
https://doi.org/10.1101/858944
https://doi.org/10.1101/858944
Autor:
S. van Leeuwen, R.J. Dekker, Ulrike Nehrdich, Timo M. Breit, Martijs J. Jonker, Wim A. Ensink, Han Rauwerda, W.C. de Leeuw, M. van Olst, Herman P. Spaink, Locati, Johanna F.B. Pagano
Small nucleolar RNAs (snoRNAs) are non-coding RNAs that play an important role in the complex maturation process of ribosomal RNAs (rRNAs). SnoRNAs are categorized in classes, with each class member having several variants present in a genome. Simila
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e7999d9334e53c787bd2f0b4d1d5592a
https://doi.org/10.1101/858936
https://doi.org/10.1101/858936
Autor:
Martijs J. Jonker, Mauro D. Locati, Rob J. Dekker, Timo M. Breit, Ulrike Nehrdich, Herman P. Spaink, Johanna F.B. Pagano, Marina van Olst, Han Rauwerda, Selina van Leeuwen, Wim A. Ensink, Farah Abdullah
Publikováno v:
Genome, 61(5), 371-378. National Research Council of Canada
Genome, 61(5), 371-378
Genome
Genome, 61(5), 371-378
Genome
rRNAs are non-coding RNAs present in all prokaryotes and eukaryotes. In eukaryotes there are four rRNAs: 18S, 5.8S, 28S, originating from a common precursor (45S), and 5S. We have recently discovered the existence of two distinct developmental types
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8483b9e1fa69a3de8f1210ea480c6d40
https://dare.uva.nl/personal/pure/en/publications/identifying-small-rnas-derived-from-maternal-and-somatictype-rrnas-in-zebrafish-development(e52cdacc-84c5-4b23-9e10-c23ed1f3beec).html
https://dare.uva.nl/personal/pure/en/publications/identifying-small-rnas-derived-from-maternal-and-somatictype-rrnas-in-zebrafish-development(e52cdacc-84c5-4b23-9e10-c23ed1f3beec).html
Autor:
Wim A. Ensink, Martijs J. Jonker, Timo M. Breit, Mark de Jong, Herman P. Spaink, Johanna F.B. Pagano, Ulrike Nehrdich, Wim C. de Leeuw, Han Rauwerda
Publikováno v:
BMC Genomics
BMC Genomics, 18, 287
BMC Genomics, 18:287. BioMed Central
BMC Genomics, Vol 18, Iss 1, Pp 1-15 (2017)
BMC Genomics, 18, 287
BMC Genomics, 18:287. BioMed Central
BMC Genomics, Vol 18, Iss 1, Pp 1-15 (2017)
Background Recently, much progress has been made in the field of gene-expression in early embryogenesis. However, the dynamic behaviour of transcriptomes in individual embryos has hardly been studied yet and the time points at which pools of embryos
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6d56b41504bd949b655f56ea5ced2128
https://doi.org/10.1186/s12864-017-3672-z
https://doi.org/10.1186/s12864-017-3672-z
Autor:
Selina van Leeuwen, Mauro D. Locati, Martijs J. Jonker, Johanna F.B. Pagano, Marina van Olst, Wim A. Ensink, Rob J. Dekker, Ulrike Nehrdich, Timo M. Breit, Geneviève Girard, Herman P. Spaink, Han Rauwerda
Publikováno v:
RNA, 23(8), 1188-1199. Cold Spring Harbor Laboratory Press
RNA, 23, 1188-1199
RNA
RNA, 23, 1188-1199
RNA
There is mounting evidence that the ribosome is not a static translation machinery, but a cell-specific, adaptive system. Ribosomal variations have mostly been studied at the protein level, even though the essential transcriptional functions are prim
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bed372d259b2bcd2f144ad2f02972ed9
https://dare.uva.nl/personal/pure/en/publications/expression-of-distinct-maternal-and-somatic-58s-18s-and-28s-rrna-types-during-zebrafish-development(da86a2e4-5d61-4d58-862e-f8adc527373f).html
https://dare.uva.nl/personal/pure/en/publications/expression-of-distinct-maternal-and-somatic-58s-18s-and-28s-rrna-types-during-zebrafish-development(da86a2e4-5d61-4d58-862e-f8adc527373f).html
Linking maternal and somatic 5S rRNA types with different sequence-specific non-LTR retrotransposons
Autor:
Herman P. Spaink, Ulrike Nehrdich, Selina van Leeuwen, Mauro D. Locati, Rob J. Dekker, Timo M. Breit, Geneviève Girard, Martijs J. Jonker, Han Rauwerda, Wim A. Ensink, Johanna F.B. Pagano, Marina van Olst, Kongju Zhu
Publikováno v:
RNA
RNA, 23, 446-456
RNA, 23(4), 446-456. Cold Spring Harbor Laboratory Press
RNA, 23, 446-456
RNA, 23(4), 446-456. Cold Spring Harbor Laboratory Press
5S rRNA is a ribosomal core component, transcribed from many gene copies organized in genomic repeats. Some eukaryotic species have two 5S rRNA types defined by their predominant expression in oogenesis or adult tissue. Our next-generation sequencing
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e06cb07b5b10e5774813c29a1bbe7240
https://pubmed.ncbi.nlm.nih.gov/28003516
https://pubmed.ncbi.nlm.nih.gov/28003516