A Cost-Effective Approach to Sequence Hundreds of Complete Mitochondrial Genomes.

Autor: Joaquin C B Nunez, Marjorie F Oleksiak

Publikováno v: PLoS ONE, Vol 11, Iss 8, p e0160958 (2016)

We present a cost-effective approach to sequence whole mitochondrial genomes for hundreds of individuals. Our approach uses small reaction volumes and unmodified (non-phosphorylated) barcoded adaptors to minimize reagent costs. We demonstrate our app

Externí odkaz: https://doaj.org/article/b523038c1ab64c5e9025d009ea4e4555

A cosmopolitan inversion drives seasonal adaptation in overwinteringDrosophila

Autor: Joaquin C. B. Nunez, Benedict A. Lenhart, Alyssa Bangerter, Connor S. Murray, Yang Yu, Taylor L. Nystrom, Courtney Tern, Priscilla A. Erickson, Alan O. Bergland

Drosophilamelanogasterliving in temperate regions evolve as they track seasonal fluctuations. Yet, we lack an understanding of the genetic architecture of seasonal adaptive tracking. By sequencing orchard populations collected across multiple years,

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::e3b121d30138c3178b17e0052d087876
https://doi.org/10.1101/2022.12.09.519676

Ecological Load and Balancing Selection in Circumboreal Barnacles

Autor: David M. Rand, Kerstin Johannesson, Rebecca Elyanow, John T. Burley, Magnus Alm Rosenblad, Henrik Glenner, Anders Blomberg, Alejandro Damian-Serrano, Stephen Rong, Kimberly B. Neil, David A. Ferranti, Joaquin C. B. Nunez

Publikováno v: Molecular Biology and Evolution
Molecular Biology and Evolution (MBE)

Acorn barnacle adults experience environmental heterogeneity at various spatial scales of their circumboreal habitat, raising the question of how adaptation to high environmental variability is maintained in the face of strong juvenile dispersal and

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e8bffedd58316174dbfb87b4152a38a9
https://doi.org/10.1093/molbev/msaa227

Drosophila Evolution over Space and Time (DEST) - A New Population Genomics Resource

Autor: Josefa González, Eliza Argyridou, Marija Tanasković, Margot Paris, Sonja Grath, J. Roberto Torres, Elena Pasyukova, Thomas Flatt, Subhash Rajpurohit, Maaria Kankare, Stephen W. Schaeffer, Antonio J. Buendía-Ruíz, Svitlana Serga, Vivien Horváth, Emily L. Behrman, Eva Puerma, Iryna Kozeretska, Jessica K. Abbott, Paul S. Schmidt, Anna Ullastres, M. Luisa Espinosa-Jimenez, Jorge Vieira, Yun Wang, Martin Kapun, Catherine Montchamp-Moreau, Jesús Murga-Moreno, Lain Guio, Joseph Outten, M. Josefa Gómez-Julián, María Bogaerts-Márquez, Christopher W. Wheat, Sònia Casillas, Brian P. Lazzaro, Volker Loeschcke, Sara Guirao-Rico, Dorcas J. Orengo, Miriam Merenciano, Banu Sebnem Onder, Omar Rota-Stabelli, Marta Coronado-Zamora, Darren J. Obbard, Katarina Eric, Lino Ometto, John Parsch, Oleksandr M. Maistrenko, Mads Fristrup Schou, Antonio Barbadilla, Vladimir E. Alatortsev, Thomas J.S. Merritt, Alan O. Bergland, Daniel K. Fabian, Heather E. Machado, Marina Stamenkovic-Radak, D. V. Mukha, Courtney Tern, Aleksandra Patenkovic, Dmitri A. Petrov, Kelly A. Dyer, Cristina P. Vieira, Joaquin C. B. Nunez, Francisco D. Gallardo-Jiménez, Marija Savic Veselinovic, Fabian Staubach, Maria Pilar Garcia Guerreiro, Mihailo Jelić, Eran Tauber, Amanda Glaser-Schmitt

Drosophila melanogaster is a leading model in population genetics and genomics, and a growing number of whole-genome datasets from natural populations of this species have been published over the last 20 years. A major challenge is the integration of

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::d96b61bd64bce3668621bace562bf7c1
https://doi.org/10.1101/2021.02.01.428994

From tides to nucleotides: Genomic signatures of adaptation to environmental heterogeneity in barnacles

Autor: Joaquin C. B. Nunez, Stephen Rong, Henrik Glenner, David M. Rand, Alejandro Damian-Serrano, Rebecca Elyanow, Bianca R. P. Brown, Anders Blomberg, David A. Ferranti, Kerstin Johannesson, Magnus Alm Rosenblad, Kimberly B. Neil

Publikováno v: Molecular Ecology
Nunez, J C B, Rong, S, Ferranti, D A, Damian-Serrano, A, Neil, K B, Glenner, H, Elyanow, R G, Brown, B R P, Alm Rosenblad, M, Blomberg, A, Johannesson, K & Rand, D M 2021, ' From tides to nucleotides : Genomic signatures of adaptation to environmental heterogeneity in barnacles ', Molecular Ecology, vol. 30, no. 23, pp. 6417-6433 . https://doi.org/10.1111/mec.15949

The northern acorn barnacle (Semibalanus balanoides) is a robust system to study the genetic basis of adaptations to highly heterogeneous environments. Adult barnacles may be exposed to highly dissimilar levels of thermal stress depending on where th

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::78c67fafeb8d7f15d0f476dad756f8a6
https://hdl.handle.net/11250/2990085