Zobrazeno 1 - 10
of 3 971
pro vyhledávání: '"Joachimiak, A"'
Autor:
Caufield, Harry, Kroll, Carlo, O'Neil, Shawn T, Reese, Justin T, Joachimiak, Marcin P, Hegde, Harshad, Harris, Nomi L, Krishnamurthy, Madan, McLaughlin, James A, Smedley, Damian, Haendel, Melissa A, Robinson, Peter N, Mungall, Christopher J
Effective data-driven biomedical discovery requires data curation: a time-consuming process of finding, organizing, distilling, integrating, interpreting, annotating, and validating diverse information into a structured form suitable for databases an
Externí odkaz:
http://arxiv.org/abs/2411.00046
Autor:
Dvorackova, Lucie, Joachimiak, Marcin P., Cerny, Michal, Kubecova, Adriana, Sklenak, Vilem, Kliegr, Tomas
Best performing approaches for scholarly document quality prediction are based on embedding models, which do not allow direct explanation of classifiers as distinct words no longer correspond to the input features for model training. Although model-a
Externí odkaz:
http://arxiv.org/abs/2409.15912
Autor:
Joachimiak, Marcin P., Miller, Mark A., Caufield, J. Harry, Ly, Ryan, Harris, Nomi L., Tritt, Andrew, Mungall, Christopher J., Bouchard, Kristofer E.
The Artificial Intelligence Ontology (AIO) is a systematization of artificial intelligence (AI) concepts, methodologies, and their interrelations. Developed via manual curation, with the additional assistance of large language models (LLMs), AIO aims
Externí odkaz:
http://arxiv.org/abs/2404.03044
Autor:
Toro, Sabrina, Anagnostopoulos, Anna V, Bello, Sue, Blumberg, Kai, Cameron, Rhiannon, Carmody, Leigh, Diehl, Alexander D, Dooley, Damion, Duncan, William, Fey, Petra, Gaudet, Pascale, Harris, Nomi L, Joachimiak, Marcin, Kiani, Leila, Lubiana, Tiago, Munoz-Torres, Monica C, O'Neil, Shawn, Osumi-Sutherland, David, Puig, Aleix, Reese, Justin P, Reiser, Leonore, Robb, Sofia, Ruemping, Troy, Seager, James, Sid, Eric, Stefancsik, Ray, Weber, Magalie, Wood, Valerie, Haendel, Melissa A, Mungall, Christopher J
Background: Ontologies are fundamental components of informatics infrastructure in domains such as biomedical, environmental, and food sciences, representing consensus knowledge in an accurate and computable form. However, their construction and main
Externí odkaz:
http://arxiv.org/abs/2312.10904
Autor:
Sabrina Toro, Anna V. Anagnostopoulos, Susan M. Bello, Kai Blumberg, Rhiannon Cameron, Leigh Carmody, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Petra Fey, Pascale Gaudet, Nomi L. Harris, Marcin P. Joachimiak, Leila Kiani, Tiago Lubiana, Monica C. Munoz-Torres, Shawn O‘Neil, David Osumi-Sutherland, Aleix Puig-Barbe, Justin T. Reese, Leonore Reiser, Sofia MC. Robb, Troy Ruemping, James Seager, Eric Sid, Ray Stefancsik, Magalie Weber, Valerie Wood, Melissa A. Haendel, Christopher J. Mungall
Publikováno v:
Journal of Biomedical Semantics, Vol 15, Iss 1, Pp 1-16 (2024)
Abstract Background Ontologies are fundamental components of informatics infrastructure in domains such as biomedical, environmental, and food sciences, representing consensus knowledge in an accurate and computable form. However, their construction
Externí odkaz:
https://doaj.org/article/d2e5c04897b04c518fa065aab65ad77e
Autor:
Marszalek, Jaroslaw, De Los Rios, Paolo, Cyr, Douglas, Mayer, Matthias P., Adupa, Vasista, Andréasson, Claes, Blatch, Gregory L., Braun, Janice E.A., Brodsky, Jeffrey L., Bukau, Bernd, Chapple, J. Paul, Conz, Charlotte, Dementin, Sébastien, Genevaux, Pierre, Genest, Olivier, Goloubinoff, Pierre, Gestwicki, Jason, Hammond, Colin M., Hines, Justin K., Ishikawa, Koji, Joachimiak, Lukasz A., Kirstein, Janine, Liberek, Krzysztof, Mokranjac, Dejana, Nillegoda, Nadinath, Ramos, Carlos H.I., Rebeaud, Mathieu, Ron, David, Rospert, Sabine, Sahi, Chandan, Shalgi, Reut, Tomiczek, Bartlomiej, Ushioda, Ryo, Ustyantseva, Elizaveta, Ye, Yihong, Zylicz, Maciej, Kampinga, Harm H.
Publikováno v:
Cell Stress & Chaperones, 2024 Jan 01. 29(1), 21-33.
Externí odkaz:
https://www.jstor.org/stable/48771897
Autor:
Callahan, Tiffany J., Tripodi, Ignacio J., Stefanski, Adrianne L., Cappelletti, Luca, Taneja, Sanya B., Wyrwa, Jordan M., Casiraghi, Elena, Matentzoglu, Nicolas A., Reese, Justin, Silverstein, Jonathan C., Hoyt, Charles Tapley, Boyce, Richard D., Malec, Scott A., Unni, Deepak R., Joachimiak, Marcin P., Robinson, Peter N., Mungall, Christopher J., Cavalleri, Emanuele, Fontana, Tommaso, Valentini, Giorgio, Mesiti, Marco, Gillenwater, Lucas A., Santangelo, Brook, Vasilevsky, Nicole A., Hoehndorf, Robert, Bennett, Tellen D., Ryan, Patrick B., Hripcsak, George, Kahn, Michael G., Bada, Michael, Baumgartner Jr, William A., Hunter, Lawrence E.
Translational research requires data at multiple scales of biological organization. Advancements in sequencing and multi-omics technologies have increased the availability of these data, but researchers face significant integration challenges. Knowle
Externí odkaz:
http://arxiv.org/abs/2307.05727
Autor:
Joachimiak, Marcin P., Caufield, J. Harry, Harris, Nomi L., Kim, Hyeongsik, Mungall, Christopher J.
Molecular biologists frequently interpret gene lists derived from high-throughput experiments and computational analysis. This is typically done as a statistical enrichment analysis that measures the over- or under-representation of biological functi
Externí odkaz:
http://arxiv.org/abs/2305.13338
Autor:
Caufield, J. Harry, Hegde, Harshad, Emonet, Vincent, Harris, Nomi L., Joachimiak, Marcin P., Matentzoglu, Nicolas, Kim, HyeongSik, Moxon, Sierra A. T., Reese, Justin T., Haendel, Melissa A., Robinson, Peter N., Mungall, Christopher J.
Publikováno v:
Bioinformatics, 2024 Mar 4;40(3)
Creating knowledge bases and ontologies is a time consuming task that relies on a manual curation. AI/NLP approaches can assist expert curators in populating these knowledge bases, but current approaches rely on extensive training data, and are not a
Externí odkaz:
http://arxiv.org/abs/2304.02711
Autor:
Joachimiak-Lechman Katarzyna
Publikováno v:
Engineering Management in Production and Services, Vol 16, Iss 3, Pp 143-156 (2024)
Eco-design is one of the cornerstones of the modern economy, as reflected in the policies aimed at implementing the principles of design for the environment in the European Union legislation. A life cycle perspective is a feature of eco-design. The s
Externí odkaz:
https://doaj.org/article/61bc0ce65c11476b8dfc3bf5021cb52e