Zobrazeno 1 - 10
of 18
pro vyhledávání: '"Jiri Jablonsky"'
Autor:
Anushree Bachhar, Jiri Jablonsky
Publikováno v:
Frontiers in Microbiology, Vol 13 (2022)
The Entner-Doudoroff pathway (ED-P) was established in 2016 as the fourth glycolytic pathway in Synechocystis sp. PCC 6803. ED-P consists of two reactions, the first catalyzed by 6-phosphogluconate dehydratase (EDD), the second by keto3-deoxygluconat
Externí odkaz:
https://doaj.org/article/c0b00b1d4afd40df987c312e3fca4b48
Autor:
Anushree Bachhar, Jiri Jablonsky
Publikováno v:
Scientific Reports, Vol 10, Iss 1, Pp 1-10 (2020)
Abstract Phosphoketolase (PKET) pathway is predominant in cyanobacteria (around 98%) but current opinion is that it is virtually inactive under autotrophic ambient CO2 condition (AC-auto). This creates an evolutionary paradox due to the existence of
Externí odkaz:
https://doaj.org/article/dd6687e5bdcf48bea5192d6a4130df1d
Publikováno v:
PLoS ONE, Vol 9, Iss 8, p e105292 (2014)
Current standard methods for kinetic and genomic modeling cannot provide deep insight into metabolic regulation. Here, we developed and evaluated a multi-scale kinetic modeling approach applicable to any prokaryote. Specifically, we highlight the pri
Externí odkaz:
https://doaj.org/article/ac44eb06276a4635b97e7e251fcbe855
Publikováno v:
PLoS ONE, Vol 8, Iss 3, p e58281 (2013)
Phosphoglycerate-mutase (PGM) is an ubiquitous glycolytic enzyme, which in eukaryotic cells can be found in different compartments. In prokaryotic cells, several PGMs are annotated/localized in one compartment. The identification and functional chara
Externí odkaz:
https://doaj.org/article/b40cceebeaa04873a51954305c42a5d5
Autor:
Jiri Jablonsky, Anushree Bachhar
Publikováno v:
Scientific Reports
Scientific Reports, Vol 10, Iss 1, Pp 1-10 (2020)
Scientific Reports, Vol 10, Iss 1, Pp 1-10 (2020)
Phosphoketolase (PKET) pathway is predominant in cyanobacteria (around 98%) but current opinion is that it is virtually inactive under autotrophic ambient CO2 condition (AC-auto). This creates an evolutionary paradox due to the existence of PKET path
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::441b9e1c8741996ce554deea9ccfe0c3
https://pubmed.ncbi.nlm.nih.gov/33328526
https://pubmed.ncbi.nlm.nih.gov/33328526
Publikováno v:
BMC Systems Biology
BMC Systems Biology, Vol 12, Iss S5, Pp 1-12 (2018)
BMC Systems Biology, Vol 12, Iss S5, Pp 1-12 (2018)
Background Photosynthetic microalgae have been in the spotlight of biotechnological production (biofuels, lipids, etc), however, current barriers in mass cultivation of microalgae are limiting its successful industrialization. Therefore, a mathematic
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::60a9e19ecde711f8976222bfa8d75cce
http://europepmc.org/articles/PMC6245592
http://europepmc.org/articles/PMC6245592
Autor:
Jiri Jablonsky, Stepan Papacek
Publikováno v:
Bioinformatics and Biomedical Engineering ISBN: 9783319561530
IWBBIO (2)
IWBBIO (2)
Photosynthetic water splitting, localized in photosystem II, is the source of atmospheric oxygen and possible alternative energy source. It is therefore important to understand the related processes which influence the efficiency of water splitting.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::6afb5f04d20325dc280ab7f9b21b1ae4
https://doi.org/10.1007/978-3-319-56154-7_61
https://doi.org/10.1007/978-3-319-56154-7_61
Publikováno v:
Scientific Reports
Cyanobacteria Synechococcus sp. PCC 7942 and Synechocystis sp. PCC 6803 show similar changes in the metabolic response to changed CO2 conditions but exhibit significant differences at the transcriptomic level. This study employs a systems biology app
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::89740c6f727f193b282d9f581030d4c2
Impact of dimeric organization of enzyme on its function: the case of photosynthetic water splitting
Publikováno v:
Bioinformatics. 24:2755-2759
Motivation: It is a question of whether the supramolecular organization of the protein complex has an impact on its function, or not. In the case of the photosystem II (PSII), water splitting might be influenced by cooperation of the PSIIs. Since PSI
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::92aeb96c9840019dfbef6dc50e7b7932
https://doi.org/10.1093/bioinformatics/btn530
https://doi.org/10.1093/bioinformatics/btn530
Publikováno v:
PLoS ONE, Vol 9, Iss 8, p e105292 (2014)
PLoS ONE
PLoS ONE
Current standard methods for kinetic and genomic modeling cannot provide deep insight into metabolic regulation. Here, we developed and evaluated a multi-scale kinetic modeling approach applicable to any prokaryote. Specifically, we highlight the pri
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::eae48e4e2da38c4a93d84567067f54ef
https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/25127487/pdf/?tool=EBI
https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/25127487/pdf/?tool=EBI