Characterization of wastewater treatment plant microbial communities and the effects of carbon sources on diversity in laboratory models.

Autor: Sangwon Lee, Jil T Geller, Tamas Torok, Cindy H Wu, Mary Singer, Francine C Reid, Daniel R Tarjan, Terry C Hazen, Adam P Arkin, Nathan J Hillson

Publikováno v: PLoS ONE, Vol 9, Iss 8, p e105689 (2014)

We are developing a laboratory-scale model to improve our understanding and capacity to assess the biological risks of genetically engineered bacteria and their genetic elements in the natural environment. Our hypothetical scenario concerns an indust

Externí odkaz: https://doaj.org/article/e09666aeee9e4c86bb42fe3a6f7a80f6

Depth-Resolved Physicochemical Characteristics of Active Layer and Permafrost Soils in an Arctic Polygonal Tundra Region

Autor: Susan S. Hubbard, John E. Peterson, Timothy J. Kneafsey, Robin D. López, Katie McKnight, Florian Soom, Baptiste Dafflon, Craig Ulrich, Jil T. Geller, Yuxin Wu, Chunwei Chou

Publikováno v: Journal of Geophysical Research: Biogeosciences. 123:1366-1386

Author(s): Wu, Y; Ulrich, C; Kneafsey, T; Lopez, R; Chou, C; Geller, J; McKnight, K; Dafflon, B; Soom, F; Peterson, J; Hubbard, S | Abstract: Permafrost physicochemical parameters play a key role in controlling the response of permafrost carbon to cl

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::a17c1f420c49aaa723b8d0c7a6508038
https://doi.org/10.1002/2018jg004413

Use of carbon stable isotopes to monitor biostimulation and electron donor fate in chromium-contaminated groundwater

Autor: Boris Faybishenko, Joern T. Larsen, Jil T. Geller, Sharon Borglin, Harry R. Beller, Markus Bill, Mark E. Conrad

Publikováno v: Chemosphere. 235

Hexavalent chromium Cr(VI) is a common inorganic contaminant in industrial areas and represents a serious threat to human health due its toxicity. Here we report experimental results from a field-scale investigation of Cr(VI) bio-immobilization at Ha

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3f71c8c603349c268d66b57a88426d6f
https://pubmed.ncbi.nlm.nih.gov/31272004

Bacterial Interactomes: Interacting Protein Partners Share Similar Function and Are Validated in Independent Assays More Frequently Than Previously Reported

Autor: Nancy L. Liu, Sonia A. Reveco, Jil T. Geller, John-Marc Chandonia, Mary E. Singer, Whenhong Yang, Susan J. Fisher, Gareth Butland, Judy D. Wall, Bonita R. Lam, Ramadevi Prathapam, Mark D. Biggin, Steven E. Brenner, Haichuan Liu, Dwayne A. Elias, Terry C. Hazen, Barbara Gold, Jennifer He, Valentine V. Trotter, Avneesh Saini, Simon Allen, Evelin D. Szakal, Swapnil R. Chhabra, Thomas R. Juba, Steven C. Hall, H. Ewa Witkowska, Maxim Shatsky

Publikováno v: Molecular & cellular proteomics : MCP, vol 15, iss 5
Shatsky, M; Allen, S; Gold, BL; Liu, NL; Juba, TR; Reveco, SA; et al.(2016). Bacterial interactomes: Interacting protein partners share similar function and are validated in independent assays more frequently than previously reported. Molecular and Cellular Proteomics, 15(5), 1539-1555. doi: 10.1074/mcp.M115.054692. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/3z82f5ct

© 2016 by The American Society for Biochemistry and Molecular Biology, Inc. Numerous affinity purification-mass spectrometry (APMS) and yeast two-hybrid screens have each defined thousands of pairwise protein-protein interactions (PPIs), most of whi

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e2884c2d910450fa99574dd0804be24a
https://escholarship.org/uc/item/3z82f5ct

Cell-Wide Responses to Low-Oxygen Exposure in Desulfovibrio vulgaris Hildenborough

Autor: Marcin P. Joachimiak, Sharon Borglin, Judy D. Wall, Jizhong Zhou, Vincent J. J. Martin, Dominique C. Joyner, Paramvir S. Dehal, Jay D. Keasling, Adam P. Arkin, Aindrila Mukhopadhyay, Alyssa M. Redding, Qiang He, Terry C. Hazen, Romy Chakraborty, Jil T. Geller, Zamin Koo Yang

Publikováno v: Journal of Bacteriology. 189:5996-6010

The responses of the anaerobic, sulfate-reducing organism Desulfovibrio vulgaris Hildenborough to low-oxygen exposure (0.1% O 2 ) were monitored via transcriptomics and proteomics. Exposure to 0.1% O 2 caused a decrease in the growth rate without aff

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b7735263b21b76e4b2038596d5ad823c
https://doi.org/10.1128/jb.00368-07