Comparison of different sequencing strategies for assembling chromosome-level genomes of extremophiles with variable GC content

Autor: Zhang, Zhidong, Liu, Guilin, Chen, Yao, Xue, Weizhen, Ji, Qianyue, Xu, Qiwu, Zhang, He, Fan, Guangyi, Huang, He, Jiang, Ling, Chen, Jianwei

Publikováno v: In iScience 19 March 2021 24(3)

Single-cell RNA sequencing illuminates the ontogeny, conservation and diversification of cartilaginous and bony fish lymphocytes.

Autor: Wang HY; State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China.; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao Marine Science and Technology Center, Qingdao, Shandong, 266237, China., Chen JY; BGI Research, Qingdao, 266555, China.; Qingdao Key Laboratory of Marine Genomics, BGI Research, Qingdao, 266555, Shandong, China., Li Y; State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China.; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao Marine Science and Technology Center, Qingdao, Shandong, 266237, China.; College of Fisheries and Life Science, Shanghai Ocean University, Shanghai, 201306, China., Zhang X; State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China.; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao Marine Science and Technology Center, Qingdao, Shandong, 266237, China., Liu X; State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China.; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao Marine Science and Technology Center, Qingdao, Shandong, 266237, China.; Qingdao-Europe Advanced Institute for Life Sciences, BGI Research, Qingdao, 266555, China., Lu Y; State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China.; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao Marine Science and Technology Center, Qingdao, Shandong, 266237, China., He H; BGI Research, Qingdao, 266555, China.; Qingdao Key Laboratory of Marine Genomics, BGI Research, Qingdao, 266555, Shandong, China., Li Y; State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China.; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao Marine Science and Technology Center, Qingdao, Shandong, 266237, China., Chen H; BGI Research, Qingdao, 266555, China.; Qingdao Key Laboratory of Marine Genomics, BGI Research, Qingdao, 266555, Shandong, China., Liu Q; BGI Research, Qingdao, 266555, China.; Qingdao Key Laboratory of Marine Genomics, BGI Research, Qingdao, 266555, Shandong, China., Huang Y; State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China.; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao Marine Science and Technology Center, Qingdao, Shandong, 266237, China., Jia Z; Key Laboratory of Exploration and Utilization of Aquatic Genetic Resources, Ministry of Education, Shanghai Ocean University, Shanghai, 201306, China., Li S; State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China.; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao Marine Science and Technology Center, Qingdao, Shandong, 266237, China., Zhang Y; State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China.; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao Marine Science and Technology Center, Qingdao, Shandong, 266237, China., Han S; State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China.; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao Marine Science and Technology Center, Qingdao, Shandong, 266237, China., Jiang S; State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China.; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao Marine Science and Technology Center, Qingdao, Shandong, 266237, China., Yang M; BGI Research, Qingdao, 266555, China.; Qingdao Key Laboratory of Marine Genomics, BGI Research, Qingdao, 266555, Shandong, China., Zhang Y; BGI Research, Qingdao, 266555, China.; Qingdao Key Laboratory of Marine Genomics, BGI Research, Qingdao, 266555, Shandong, China., Zhou L; BGI Research, Qingdao, 266555, China.; Qingdao Key Laboratory of Marine Genomics, BGI Research, Qingdao, 266555, Shandong, China., Tan F; BGI Research, Qingdao, 266555, China.; Qingdao Key Laboratory of Marine Genomics, BGI Research, Qingdao, 266555, Shandong, China., Ji Q; MGI Tech, Shenzhen, 518083, China., Meng L; BGI Research, Qingdao, 266555, China.; Qingdao Key Laboratory of Marine Genomics, BGI Research, Qingdao, 266555, Shandong, China., Wang R; State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China.; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao Marine Science and Technology Center, Qingdao, Shandong, 266237, China., Liu Y; State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China.; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao Marine Science and Technology Center, Qingdao, Shandong, 266237, China., Liu K; State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China.; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao Marine Science and Technology Center, Qingdao, Shandong, 266237, China., Wang Q; State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China.; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao Marine Science and Technology Center, Qingdao, Shandong, 266237, China., Seim I; Integrative Biology Laboratory, College of Life Sciences, Nanjing Normal University, Nanjing, 210023, China.; School of Biology and Environmental Science, Queensland University of Technology, Brisbane, 4000, Australia., Zou J; Key Laboratory of Exploration and Utilization of Aquatic Genetic Resources, Ministry of Education, Shanghai Ocean University, Shanghai, 201306, China., Fan G; BGI Research, Qingdao, 266555, China.; Qingdao Key Laboratory of Marine Genomics, BGI Research, Qingdao, 266555, Shandong, China.; BGI Research, Shenzhen, 518083, China., Liu S; MGI Tech, Shenzhen, 518083, China. liushanshan@mgi-tech.com., Shao C; State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, Shandong, 266071, China. shaocw@ysfri.ac.cn.; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao Marine Science and Technology Center, Qingdao, Shandong, 266237, China. shaocw@ysfri.ac.cn.

Publikováno v: Nature communications [Nat Commun] 2024 Sep 03; Vol. 15 (1), pp. 7627. Date of Electronic Publication: 2024 Sep 03.