Zobrazeno 1 - 10
of 28
pro vyhledávání: '"Jerven Bolleman"'
Autor:
Marc Feuermann, Emmanuel Boutet, Anne Morgat, Kristian B. Axelsen, Parit Bansal, Jerven Bolleman, Edouard de Castro, Elisabeth Coudert, Elisabeth Gasteiger, Sébastien Géhant, Damien Lieberherr, Thierry Lombardot, Teresa B. Neto, Ivo Pedruzzi, Sylvain Poux, Monica Pozzato, Nicole Redaschi, Alan Bridge, on behalf of the UniProt Consortium
Publikováno v:
Metabolites, Vol 11, Iss 1, p 48 (2021)
The UniProt Knowledgebase UniProtKB is a comprehensive, high-quality, and freely accessible resource of protein sequences and functional annotation that covers genomes and proteomes from tens of thousands of taxa, including a broad range of plants an
Externí odkaz:
https://doaj.org/article/d83825c386eb4381973c7daef4eabd30
Autor:
Philippe Le Mercier, Jerven Bolleman, Edouard de Castro, Elisabeth Gasteiger, Parit Bansal, Andrea H Auchincloss, Emmanuel Boutet, Lionel Breuza, Cristina Casals-Casas, Anne Estreicher, Marc Feuermann, Damien Lieberherr, Catherine Rivoire, Ivo Pedruzzi, Nicole Redaschi, Alan Bridge
Publikováno v:
Database. 2022
SwissBioPics (www.swissbiopics.org) is a freely available resource of interactive, high-resolution cell images designed for the visualization of subcellular location data. SwissBioPics provides images describing cell types from all kingdoms of life
Autor:
Núria Queralt-Rosinach, Garcia Castro Lj, Thomas Liener, Jerven Bolleman, Labra-Gayo Je, dumontier m, Simon Jupp, Chunlei Wu, Tazro Ohta
Validating RDF data becomes necessary in order to ensure data compliance against the conceptualization model it follows, e.g., schema or ontology behind the data, and improve data consistency and completeness. There are different approaches to valida
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::94ceda5c8f994d385d92018b5c1a2951
https://doi.org/10.37044/osf.io/8qdse
https://doi.org/10.37044/osf.io/8qdse
Autor:
Edouard de Castro, Chantal Hulo, Delphine Baratin, Béatrice A. Cuche, Sebastien Gehant, Elisabeth Coudert, Catherine Rivoire, Ivo Pedruzzi, Nicole Redaschi, Alan Bridge, Patrick Masson, Ioannis Xenarios, Jerven Bolleman, Andrea H. Auchincloss
Publikováno v:
GigaScience
BackgroundGenome and proteome annotation pipelines are generally custom built and not easily reusable by other groups. This leads to duplication of effort, increased costs, and suboptimal annotation quality. One way to address these issues is to enco
Autor:
Takatomo Fujisawa, Shujiro Okuda, Rutger A. Vos, Yuki Naito, Benedict Paten, Toshihisa Takagi, Atsushi Fukushima, Issaku Yamada, Kouji Kozaki, Atsuko Yamaguchi, Shin Kawano, Jeremy Nguyen-Xuan, Toshiaki Katayama, Tudor Groza, Takeru Nakazato, Tazro Ohta, Toshiaki Tokimatsu, Akira R. Kinjo, Tsuyosi Tabata, Bruno Vieira, Kotone Itaya, Eric W. Deutsch, Evan E Bolton, Kenjiro Kosaki, Yasunori Yamamoto, Sadahiro Kumagai, Soichi Ogishima, Pjotr Prins, Mark Wilkinson, Núria Queralt-Rosinach, Colin Hercus, Philip Prathipati, Alexander Garcia, Hidemasa Bono, Shuichi Kawashima, Jerven Bolleman, Yuki Moriya, Chih-Hsuan Wei, Ryota Yamanaka, Masaaki Matsubara, Akiyasu C. Yoshizawa, Jesualdo Tomás Fernández-Breis, Naoki Nishida, Thomas Lütteke, Hiroyo Nishide, Jin-Dong Kim, Kees Burger, Kevin Bretonnel Cohen, Nobuyuki P. Aoki, Kozo Nishida, Joe Miyamoto, Michel Dumontier, Robert Hoehndorf, Attayeb Mohsen, Peter Amstutz, Nick Juty, Raoul J. P. Bonnal, Kieron Taylor, Hiroyuki Mishima, Naohisa Goto, Masaaki Kotera, Tatsuya Kushida, Hiroshi Mori, Ikuo Uchiyama, Takeshi Kawashima, Kazutoshi Yoshitake, Jean-Luc Perret, Kazuharu Arakawa, Jee-Hyub Kim, Daisuke Shinmachi, Shinya Suzuki, Mark Thompson, Terue Takatsuki, Erick Antezana, Hongyan Wu, Gang Fu, Hirokazu Chiba
Publikováno v:
F1000Research, 9. F1000 Research Ltd.
F1000Research
F1000Research
We report on the activities of the 2015 edition of the BioHackathon, an annual event that brings together researchers and developers from around the world to develop tools and technologies that promote the reusability of biological data. We discuss i
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::69bc30c9d74c1248bb68af22746ba6f9
https://cris.maastrichtuniversity.nl/en/publications/f3a06590-62bd-47fc-bf50-b89db8f73b70
https://cris.maastrichtuniversity.nl/en/publications/f3a06590-62bd-47fc-bf50-b89db8f73b70
Autor:
Fábio Madeira, Emmanuel Boutet, Ursula Hinz, Teresa Batista Neto, Parit Bansal, Manuela Pruess, Kristian B. Axelsen, Arnaud Kerhornou, Cecilia N. Arighi, Lai-Su L. Yeh, Shadab Ahmad, John S. Garavelli, Cathy H. Wu, Florence Jungo, Alan Bridge, Leonardo Gonzales, Sandra Orchard, Patrick Masson, Douglas Teodoro, Maria Jesus Martin, Anne Estreicher, Kamal Chikh Echioukh, Hongzhan Huang, Patrick Ruch, Christian J. A. Sigrist, C. R. Vinayaka, Yvonne Lussi, Anne Morgat, Yongxing Chen, Austra Cukura, Emanuele Alpi, Ramona Britto, Alexandr Ignatchenko, Sylvain Poux, Rizwan Ishtiaq, Lionel Breuza, Jun Fan, Edouard de Castro, Petteri Jokinen, Nicole Redaschi, Darren A. Natale, Daniel Rice, Giuseppe Insana, George Georghiou, Nevila Hyka-Nouspikel, Karen E. Ross, Katie Moulang, Vicente Lara, Arnaud Gos, Michael Tognolli, Alok Mishra, Ivo Pedruzzi, Nidhi Tyagi, Leyla Jael Garcia Castro, Edward Turner, Cristina Casals-Casas, Tunca Doğan, Nadine Gruaz-Gumowski, Chantal Hulo, Maria Livia Famiglietti, Andrew Nightingale, Paul Denny, Lucila Aimo, Rossana Zaru, Vishal Joshi, Alistair MacDougall, Andre Stutz, Penelope Garmiri, Carla Susana Oliveira, Hermann Zellner, Marie-Claude Blatter, Emily H Bowler-Barnett, Philippe Le Mercier, Abdulrahman Hussein, Catherine Rivoire, Tony Sawford, Milagros Rodriguez Lopez, Salvo Paesano, Vladimir Volynkin, Manuela Menchi, Hema Bye-A-Jee, Monica Pozzato, Kati Laiho, Delphine Baratin, Qinghua Wang, Leslie Arminski, Preethi Vasudev, Sangya Pundir, Jian Zhang, Emma Hatton-Ellis, Kate Warner, Lucille Pourcel, Elisabeth Gasteiger, Marc Feuermann, Thierry Lombardot, Jerven Bolleman, Mahdi Mahmoudy, Shyamala Sundaram, Alex Bateman, Xavier Watkins, Rahat Agivetova, Guoying Qi, Peter B. McGarvey, Xavier D. Martin, Chuming Chen, Jie Luo, Ray Coetzee, K Sonesson, Alan Wilter Sousa da Silva, ThankGod Ebenezer, Elena Speretta, Rodrigo Lopez, Elisabeth Coudert, Aurelien Luciani, Vivienne Baillie Gerritsen, Yuqi Wang, M Doche, Michele Magrane, Antonia Lock, Dolnide Dornevil, Sandrine Pilbout, Borisas Bursteinas, Andrea H. Auchincloss, Béatrice A. Cuche, Dushyanth Jyothi, Rabie Saidi, Joseph Sampson, Laure Verbregue, Sebastien Gehant, Guillaume Keller, Shriya Raj, Damien Lieberherr, Ghislaine Argoud-Puy
Publikováno v:
Nucleic acids symposium series, 49(D1):D480-D489
Nucleic Acids Research
Nucleic acids research, Vol. 49, No D1 (2021) pp. D480-D489
Nucleic Acids Research
Nucleic acids research, Vol. 49, No D1 (2021) pp. D480-D489
The aim of the UniProt Knowledgebase is to provide users with a comprehensive, high-quality and freely accessible set of protein sequences annotated with functional information. In this article, we describe significant updates that we have made over
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cbc39a701c00fab2f8e9cd325fc3977e
https://repository.publisso.de/resource/frl:6425514
https://repository.publisso.de/resource/frl:6425514
Autor:
Sylvain Poux, Delphine Baratin, Ioannis Xenarios, Teresa Batista Neto, Elisabeth Gasteiger, Sebastien Gehant, Nicole Redaschi, Anne Morgat, Thierry Lombardot, Jerven Bolleman, Edouard de Castro, Parit Bansal, Monica Pozzato, Elisabeth Coudert, Kristian B. Axelsen, Alan Bridge
Publikováno v:
Bioinformatics
MotivationTo provide high quality computationally tractable enzyme annotation in UniProtKB using Rhea, a comprehensive expert-curated knowledgebase of biochemical reactions which describes reaction participants using the ontology ChEBI (Chemical Enti
Autor:
Karl-Heinz Krause, Alan Bridge, Fiona Augsburger, Vincent Jaquet, Ioannis Xenarios, Jerven Bolleman, Sten Ilmjärv, Robin Liechti, Jenny Sandström
Publikováno v:
Scientific data, vol. 6, no. 1, pp. 45
Scientific Data, Vol 6, Iss 1, Pp 1-6 (2019)
Scientific Data, Vol. 6, No 1 (2019) P. 45
Scientific Data
Scientific Data, Vol 6, Iss 1, Pp 1-6 (2019)
Scientific Data, Vol. 6, No 1 (2019) P. 45
Scientific Data
The number of chemical compounds and associated experimental data in public databases is growing, but presently there is no simple way to access these data in a quick and synoptic manner. Instead, data are fragmented across different resources and in
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::56921ebd17b4be5e2b34f7c4c5d82e9b
https://serval.unil.ch/resource/serval:BIB_55F187AAC00A.P001/REF.pdf
https://serval.unil.ch/resource/serval:BIB_55F187AAC00A.P001/REF.pdf
Autor:
Karl-Heinz Krause, Jenny Sandström, Alan Bridge, Jerven Bolleman, Robin Liechti, Ioannis Xenarios, Sten Ilmjärv, Vincent Jaquet, Fiona Augsburger
Modern medicine and an increasingly complex environment contribute to exposure of humans to a large number of chemical compounds, that can potentially be toxic. Although widely used, compound testing in animals has important limitations. In vitro tes
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::73d1d682b81680da92431a691a16ad3f
https://doi.org/10.1101/248898
https://doi.org/10.1101/248898
Autor:
Morris A. Swertz, Luiz Olavo Bonino da Silva Santos, Erik M. van Mulligen, Michel Dumontier, Arnold Kuzniar, Mark Thompson, Paolo Ciccarese, Timothy Clark, Fleur Kelpin, Ruben Verborgh, Alasdair J. G. Gray, Anand Gavai, Mark Wilkinson, Erik Anthony Schultes, Jerven Bolleman, Rajaram Kaliyaperumal
Publikováno v:
PEERJ COMPUTER SCIENCE
PeerJ Computer Science, Vol 3, p e110 (2017)
Peerj computer science. PEERJ INC
PeerJ Computer Science. PeerJ
PeerJ Computer Science, Vol 3, p e110 (2017)
Peerj computer science. PEERJ INC
PeerJ Computer Science. PeerJ
Data in the life sciences are extremely diverse and are stored in a broad spectrum of repositories ranging from those designed for particular data types (such as KEGG for pathway data or UniProt for protein data) to those that are general-purpose (su
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::24cea76a031205a2af3ff6753cdcc5f8
https://hdl.handle.net/1854/LU-8518457
https://hdl.handle.net/1854/LU-8518457