Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis.

Autor: Rami A Dalloul, Julie A Long, Aleksey V Zimin, Luqman Aslam, Kathryn Beal, Le Ann Blomberg, Pascal Bouffard, David W Burt, Oswald Crasta, Richard P M A Crooijmans, Kristal Cooper, Roger A Coulombe, Supriyo De, Mary E Delany, Jerry B Dodgson, Jennifer J Dong, Clive Evans, Karin M Frederickson, Paul Flicek, Liliana Florea, Otto Folkerts, Martien A M Groenen, Tim T Harkins, Javier Herrero, Steve Hoffmann, Hendrik-Jan Megens, Andrew Jiang, Pieter de Jong, Pete Kaiser, Heebal Kim, Kyu-Won Kim, Sungwon Kim, David Langenberger, Mi-Kyung Lee, Taeheon Lee, Shrinivasrao Mane, Guillaume Marcais, Manja Marz, Audrey P McElroy, Thero Modise, Mikhail Nefedov, Cédric Notredame, Ian R Paton, William S Payne, Geo Pertea, Dennis Prickett, Daniela Puiu, Dan Qioa, Emanuele Raineri, Magali Ruffier, Steven L Salzberg, Michael C Schatz, Chantel Scheuring, Carl J Schmidt, Steven Schroeder, Stephen M J Searle, Edward J Smith, Jacqueline Smith, Tad S Sonstegard, Peter F Stadler, Hakim Tafer, Zhijian Jake Tu, Curtis P Van Tassell, Albert J Vilella, Kelly P Williams, James A Yorke, Liqing Zhang, Hong-Bin Zhang, Xiaojun Zhang, Yang Zhang, Kent M Reed

Publikováno v: PLoS Biology, Vol 8, Iss 9, p e1000475 (2010)

A synergistic combination of two next-generation sequencing platforms with a detailed comparative BAC physical contig map provided a cost-effective assembly of the genome sequence of the domestic turkey (Meleagris gallopavo). Heterozygosity of the se

Externí odkaz: https://doaj.org/article/202b20ab287a4e41a67ff5edaf644d18

Widely Applicable PCR Markers for Sex Identification in Birds

Autor: Phillip C. Delekta, William S. Payne, Roman O. Kulibaba, Adam M. Betuel, Elaina M. Tuttle, Michael N Romanov, Oliver A. Ryder, Oleksandr V. Tereshchenko, Rusty A. Gonser, Leona G. Chemnick, Jerry B. Dodgson

Publikováno v: Russian Journal of Genetics. 55:220-231

To aid in avian sex determination if birds are not sexually dimorphic and/or they are sexually immature, several molecular assays involving the polymerase chain reaction (PCR) have been developed. To test in a variety of domestic and wild avian speci

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0359aac2c5b71bf4a6972177f02791b5
https://doi.org/10.1134/s1022795419020121

A New Chicken Genome Assembly Provides Insight into Avian Genome Structure

Autor: Aleksey V. Zimin, Rachel Hawken, Chris Markovic, Jerry B. Dodgson, Milinn Kremitzki, Nathan Bouk, Claudio V. Mello, Chad Tomlinson, Andrew S. Mason, Hans H. Cheng, Peter V. Lovell, David W. Burt, Tina Graves, Marcia M. Miller, William Chow, Françoise Thibaud-Nissen, Janet E. Fulton, Tamer A. Mansour, LaDeana W. Hillier, Valerie Fillon, Alain Vignal, Mitch Abrahamsen, C. Titus Brown, Wesley C. Warren, Morgan Wirthlin, Patrick Minx, Kerstin Howe, Alexis B. Pyrkosz, Richard Kuo, Valerie A. Schneider, Kim D. Pruitt, Mireille Morisson

Publikováno v: G3: Genes|Genomes|Genetics
G3
G3, Genetics Society of America, 2017, 7 (1), pp.109-117. ⟨10.1534/g3.116.035923⟩
Warren, W C, Hillier, L W, Tomlinson, C, Minx, P, Kremitzki, M, Graves, T, Markovic, C, Bouk, N, Pruitt, K D, Thibaud-Nissen, F, Schneider, V, Mansour, T A, Brown, C T, Zimin, A, Hawken, R, Abrahamsen, M, Pyrkosz, A B, Morisson, M, Fillon, V, Vignal, A, Chow, W, Howe, K, Fulton, J E, Miller, M M, Lovell, P, Mello, C V, Wirthlin, M, Mason, A S, Kuo, R, Burt, D W, Dodgson, J B & Cheng, H H 2017, ' A New Chicken Genome Assembly Provides Insight into Avian Genome Structure ', G3: Genes | Genomes | Genetics, vol. 7, no. 1, pp. 109-117 . https://doi.org/10.1534/g3.116.035923
G3-Genes Genomes Genetics 1 (7), 109-117. (2017)
G3: Genes, Genomes, Genetics, Vol 7, Iss 1, Pp 109-117 (2017)
G3 (Bethesda, Md.), vol 7, iss 1

The importance of the Gallus gallus (chicken) as a model organism and agricultural animal merits a continuation of sequence assembly improvement efforts. We present a new version of the chicken genome assembly (Gallus_gallus-5.0; GCA_000002315.3), bu

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6ac69020dfd81249066f2b83a3e028f9
http://europepmc.org/articles/PMC5217101

The cellular and molecular etiology of the craniofacial defects in the avian ciliopathic mutant talpid2

Autor: Mary E. Delany, Elizabeth A. O'Hare, Samantha A. Brugmann, Elizabeth N. Schock, William M. Muir, Ching-Fang Chang, Hans H. Cheng, Jerry B. Dodgson, Richard E. Edelmann

Publikováno v: Development (Cambridge, England)

talpid(2) is an avian autosomal recessive mutant with a myriad of congenital malformations, including polydactyly and facial clefting. Although phenotypically similar to talpid(3), talpid(2) has a distinct facial phenotype and an unknown cellular, mo

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::26456c21618ac07191a5ef8c4c18cda7
https://doi.org/10.1242/dev.105924

Allele-specific expression analysis reveals CD79B has a cis-acting regulatory element that responds to Marek's disease virus infection in chickens

Autor: Mehmet Ali Yildiz, Hans H. Cheng, Jerry B. Dodgson, Hasan Meydan

Publikováno v: Poultry Science. 90:1206-1211

Marek's disease (MD) is a T cell lympho- ma disease of domestic chickens induced by the Marek's disease virus (MDV), a highly infectious and naturally oncogenic alphaherpesvirus. Enhancing genetic resis- tance to MD in poultry is an attractive method

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::89ab9b62763bcdf25991c567cca2e090
https://doi.org/10.3382/ps.2010-01295