Zobrazeno 1 - 10
of 97
pro vyhledávání: '"Jennifer S, Davis"'
Autor:
Jennifer S. Davis, Preeti Kanikarla-Marie, Mihai Gagea, Patrick L. Yu, Dexing Fang, Manu Sebastian, Peiying Yang, Ernest Hawk, Roderick Dashwood, Lenard M. Lichtenberger, David Menter, Scott Kopetz
Publikováno v:
BMC Cancer, Vol 20, Iss 1, Pp 1-10 (2020)
Abstract Background Non-steroidal anti-inflammatory drugs (NSAIDs) such as aspirin and sulindac are effective for colorectal cancer prevention in humans and some animal models, but concerns over gastro-intestinal (GI) ulceration and bleeding limit th
Externí odkaz:
https://doaj.org/article/07034839c3374383bc326e0044408395
Autor:
Shailesh Mahesh Advani, Pragati Shailesh Advani, Derek W. Brown, Stacia M. DeSantis, Krittiya Korphaisarn, Helena M. VonVille, Jan Bressler, David S. Lopez, Jennifer S. Davis, Carrie R. Daniel, Amir Mehrvarz Sarshekeh, Dejana Braithwaite, Michael D. Swartz, Scott Kopetz
Publikováno v:
BMC Cancer, Vol 19, Iss 1, Pp 1-13 (2019)
Abstract Background CpG Island Methylator Phenotype (CIMP) is an epigenetic phenotype in CRC characterized by hypermethylation of CpG islands in promoter regions of tumor suppressor genes, leading to their transcriptional silencing and loss of functi
Externí odkaz:
https://doaj.org/article/5491248a6d27469096c02f5b19e40f79
Autor:
Caitlin V. McCowan, Duncan Salmon, Jingzhe Hu, Shivanand Pudakalakatti, Nicholas Whiting, Jennifer S. Davis, Daniel D. Carson, Niki M. Zacharias, Pratip K. Bhattacharya, Mary C. Farach-Carson
Publikováno v:
Diagnostics, Vol 12, Iss 3, p 610 (2022)
Medical imaging devices often use automated processing that creates and displays a self-normalized image. When improperly executed, normalization can misrepresent information or result in an inaccurate analysis. In the case of diagnostic imaging, a f
Externí odkaz:
https://doaj.org/article/c8c6d7a51d4245e9baded9c6b6fa179d
Autor:
Dipen M. Maru, Scott Kopetz, Jennifer S. Davis, Ignacio I. Wistuba, Riham Katkhuda, David Menter, Michael J. Overman, Van K. Morris, Mark J. Routbort, Omkara Veeranki, Alicia Mejia, Hector A. Alvarez, Bradley M. Broom, Manyam Ganiraju, Wei Wei, Baili Zhang, Zhimin Tong, Huiqin Chen, Justin Windham, Neelima G. Reddy, Wonyul Lee, Dzifa Y. Duose, Yusha Liu, Rajyalakshmi Luthra, Jeffrey S. Morris
Heatmap showing fRMA level gene data from Affymetrix subsets in training and validation datasets.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::05f15968b6c13a52a5647ae3ac5e8c46
https://doi.org/10.1158/1078-0432.22478946
https://doi.org/10.1158/1078-0432.22478946
Autor:
Dipen M. Maru, Scott Kopetz, Jennifer S. Davis, Ignacio I. Wistuba, Riham Katkhuda, David Menter, Michael J. Overman, Van K. Morris, Mark J. Routbort, Omkara Veeranki, Alicia Mejia, Hector A. Alvarez, Bradley M. Broom, Manyam Ganiraju, Wei Wei, Baili Zhang, Zhimin Tong, Huiqin Chen, Justin Windham, Neelima G. Reddy, Wonyul Lee, Dzifa Y. Duose, Yusha Liu, Rajyalakshmi Luthra, Jeffrey S. Morris
Supplementary methods and results
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::418dc7703aeafd7282570d7ce49d56f6
https://doi.org/10.1158/1078-0432.22478952.v1
https://doi.org/10.1158/1078-0432.22478952.v1
Autor:
Dipen M. Maru, Scott Kopetz, Jennifer S. Davis, Ignacio I. Wistuba, Riham Katkhuda, David Menter, Michael J. Overman, Van K. Morris, Mark J. Routbort, Omkara Veeranki, Alicia Mejia, Hector A. Alvarez, Bradley M. Broom, Manyam Ganiraju, Wei Wei, Baili Zhang, Zhimin Tong, Huiqin Chen, Justin Windham, Neelima G. Reddy, Wonyul Lee, Dzifa Y. Duose, Yusha Liu, Rajyalakshmi Luthra, Jeffrey S. Morris
Validation of CMS assay at the research molecular diagnostic laboratory. Each sample classified in to CMS subtype 1-4 or mixed (M) subtype.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::35fe301f340f8a6d435b570f344270d7
https://doi.org/10.1158/1078-0432.22478922
https://doi.org/10.1158/1078-0432.22478922
Autor:
Dipen M. Maru, Scott Kopetz, Jennifer S. Davis, Ignacio I. Wistuba, Riham Katkhuda, David Menter, Michael J. Overman, Van K. Morris, Mark J. Routbort, Omkara Veeranki, Alicia Mejia, Hector A. Alvarez, Bradley M. Broom, Manyam Ganiraju, Wei Wei, Baili Zhang, Zhimin Tong, Huiqin Chen, Justin Windham, Neelima G. Reddy, Wonyul Lee, Dzifa Y. Duose, Yusha Liu, Rajyalakshmi Luthra, Jeffrey S. Morris
3A. Classification accuracy of CMS1 samples on training data set V1 using 4-fold cross validation as function of number of genes.3B.able-3B: Classification accuracy of CMS1 samples on validation data set (V2) as function of number of genes.3C. Classi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::04fa3fbe559cfa8413846f7511bbec96
https://doi.org/10.1158/1078-0432.22478913.v1
https://doi.org/10.1158/1078-0432.22478913.v1
Autor:
Scott Kopetz, Michael J. Overman, Dipen M. Maru, Jaffer A. Ajani, Hey Min Lee, Jonathan M. Loree, Jennifer S. Davis, Jeffrey Morris, John Paul Shen, Jason Willis, Michael Lam, Anuj Verma, Riham Katkhuda, Shailesh M. Advani, Ganiraju C. Manyam, Jason Roszik, Jumanah Alshenaifi, Amir Mehrvarz Sarshekeh
Supplementary Fig S3. Association of gene size and the differential expression of IFN-γ pathway in genes commonly mutated in MSS CRC
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::16979c2b20c00f49d6d0aed98ab62f34
https://doi.org/10.1158/1078-0432.22480986.v1
https://doi.org/10.1158/1078-0432.22480986.v1
Autor:
Dipen M. Maru, Scott Kopetz, Jennifer S. Davis, Ignacio I. Wistuba, Riham Katkhuda, David Menter, Michael J. Overman, Van K. Morris, Mark J. Routbort, Omkara Veeranki, Alicia Mejia, Hector A. Alvarez, Bradley M. Broom, Manyam Ganiraju, Wei Wei, Baili Zhang, Zhimin Tong, Huiqin Chen, Justin Windham, Neelima G. Reddy, Wonyul Lee, Dzifa Y. Duose, Yusha Liu, Rajyalakshmi Luthra, Jeffrey S. Morris
Classification accuracy on validation data set, the entire set (V2), out-of-sample prediction (V2o), Affymetrix subset (V2a), and TCGA RNAseq subset (TCGA) for various methods as function of number of genes.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::422bf7059f8a508e00a66a2f92a83603
https://doi.org/10.1158/1078-0432.22478901
https://doi.org/10.1158/1078-0432.22478901
Autor:
Dipen M. Maru, Scott Kopetz, Jennifer S. Davis, Ignacio I. Wistuba, Riham Katkhuda, David Menter, Michael J. Overman, Van K. Morris, Mark J. Routbort, Omkara Veeranki, Alicia Mejia, Hector A. Alvarez, Bradley M. Broom, Manyam Ganiraju, Wei Wei, Baili Zhang, Zhimin Tong, Huiqin Chen, Justin Windham, Neelima G. Reddy, Wonyul Lee, Dzifa Y. Duose, Yusha Liu, Rajyalakshmi Luthra, Jeffrey S. Morris
Purpose:Consensus molecular subtyping (CMS) of colorectal cancer has potential to reshape the colorectal cancer landscape. We developed and validated an assay that is applicable on formalin-fixed, paraffin-embedded (FFPE) samples of colorectal cancer
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8d66aeddd7734224aede69c08832f621
https://doi.org/10.1158/1078-0432.c.6530082
https://doi.org/10.1158/1078-0432.c.6530082