Zobrazeno 1 - 10
of 17
pro vyhledávání: '"Jennifer Balacco"'
Autor:
Matteo Sebastianelli, Sifiso M. Lukhele, Simona Secomandi, Stacey G. de Souza, Bettina Haase, Michaella Moysi, Christos Nikiforou, Alexander Hutfluss, Jacquelyn Mountcastle, Jennifer Balacco, Sarah Pelan, William Chow, Olivier Fedrigo, Colleen T. Downs, Ara Monadjem, Niels J. Dingemanse, Erich D. Jarvis, Alan Brelsford, Bridgett M. vonHoldt, Alexander N. G. Kirschel
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-15 (2024)
Abstract Vocal rhythm plays a fundamental role in sexual selection and species recognition in birds, but little is known of its genetic basis due to the confounding effect of vocal learning in model systems. Uncovering its genetic basis could facilit
Externí odkaz:
https://doaj.org/article/ab15cb93a56b4be18147c884263baa1e
Autor:
Yury V. Bukhman, Susanne Meyer, Li-Fang Chu, Linelle Abueg, Jessica Antosiewicz-Bourget, Jennifer Balacco, Michael Brecht, Erica Dinatale, Olivier Fedrigo, Giulio Formenti, Arkarachai Fungtammasan, Swagarika Jaharlal Giri, Michael Hiller, Kerstin Howe, Daisuke Kihara, Daniel Mamott, Jacquelyn Mountcastle, Sarah Pelan, Keon Rabbani, Ying Sims, Alan Tracey, Jonathan M. D. Wood, Erich D. Jarvis, James A. Thomson, Mark J. P. Chaisson, Ron Stewart
Publikováno v:
Scientific Data, Vol 11, Iss 1, Pp 1-11 (2024)
Abstract Suncus etruscus is one of the world’s smallest mammals, with an average body mass of about 2 grams. The Etruscan shrew’s small body is accompanied by a very high energy demand and numerous metabolic adaptations. Here we report a chromoso
Externí odkaz:
https://doaj.org/article/ec7570f6ca634d4787cf612628d10141
Autor:
Young Ho Lee, Linelle Abueg, Jin-Koo Kim, Young Wook Kim, Olivier Fedrigo, Jennifer Balacco, Giulio Formenti, Kerstin Howe, Alan Tracey, Jonathan Wood, Françoise Thibaud-Nissen, Bo Hye Nam, Eun Soo No, Hye Ran Kim, Chul Lee, Erich D. Jarvis, Heebal Kim
Publikováno v:
Scientific Data, Vol 10, Iss 1, Pp 1-12 (2023)
Abstract Chub mackerels (Scomber japonicus) are a migratory marine fish widely distributed in the Indo-Pacific Ocean. They are globally consumed for their high Omega-3 content, but their population is declining due to global warming. Here, we generat
Externí odkaz:
https://doaj.org/article/56788d62a3744ca19ad511e40087ab5d
Autor:
Jakub Skorupski, Florian Brandes, Christian Seebass, Wolfgang Festl, Przemysław Śmietana, Jennifer Balacco, Nivesh Jain, Tatiana Tilley, Linelle Abueg, Jonathan Wood, Ying Sims, Giulio Formenti, Olivier Fedrigo, Erich D. Jarvis
Publikováno v:
International Journal of Molecular Sciences, Vol 24, Iss 19, p 14816 (2023)
The European mink Mustela lutreola (Mustelidae) ranks among the most endangered mammalian species globally, experiencing a rapid and severe decline in population size, density, and distribution. Given the critical need for effective conservation stra
Externí odkaz:
https://doaj.org/article/ac0e52d57a2743ee9ee4a97a7bfb6644
Autor:
Simona Secomandi, Guido R. Gallo, Marcella Sozzoni, Alessio Iannucci, Elena Galati, Linelle Abueg, Jennifer Balacco, Manuela Caprioli, William Chow, Claudio Ciofi, Joanna Collins, Olivier Fedrigo, Luca Ferretti, Arkarachai Fungtammasan, Bettina Haase, Kerstin Howe, Woori Kwak, Gianluca Lombardo, Patrick Masterson, Graziella Messina, Anders P. Møller, Jacquelyn Mountcastle, Timothy A. Mousseau, Joan Ferrer Obiol, Anna Olivieri, Arang Rhie, Diego Rubolini, Marielle Saclier, Roscoe Stanyon, David Stucki, Françoise Thibaud-Nissen, James Torrance, Antonio Torroni, Kristina Weber, Roberto Ambrosini, Andrea Bonisoli-Alquati, Erich D. Jarvis, Luca Gianfranceschi, Giulio Formenti
Publikováno v:
Cell Reports, Vol 42, Iss 1, Pp 111992- (2023)
Summary: Insights into the evolution of non-model organisms are limited by the lack of reference genomes of high accuracy, completeness, and contiguity. Here, we present a chromosome-level, karyotype-validated reference genome and pangenome for the b
Externí odkaz:
https://doaj.org/article/e8b540fa7cef4bd6910b5bfb40b81e7f
Autor:
Giulio Formenti, Arang Rhie, Jennifer Balacco, Bettina Haase, Jacquelyn Mountcastle, Olivier Fedrigo, Samara Brown, Marco Rosario Capodiferro, Farooq O. Al-Ajli, Roberto Ambrosini, Peter Houde, Sergey Koren, Karen Oliver, Michelle Smith, Jason Skelton, Emma Betteridge, Jale Dolucan, Craig Corton, Iliana Bista, James Torrance, Alan Tracey, Jonathan Wood, Marcela Uliano-Silva, Kerstin Howe, Shane McCarthy, Sylke Winkler, Woori Kwak, Jonas Korlach, Arkarachai Fungtammasan, Daniel Fordham, Vania Costa, Simon Mayes, Matteo Chiara, David S. Horner, Eugene Myers, Richard Durbin, Alessandro Achilli, Edward L. Braun, Adam M. Phillippy, Erich D. Jarvis, The Vertebrate Genomes Project Consortium
Publikováno v:
Genome Biology, Vol 22, Iss 1, Pp 1-22 (2021)
Abstract Background Modern sequencing technologies should make the assembly of the relatively small mitochondrial genomes an easy undertaking. However, few tools exist that address mitochondrial assembly directly. Results As part of the Vertebrate Ge
Externí odkaz:
https://doaj.org/article/cc71db7a3dd94d1194b7e3358514ae34
Autor:
Simon A. Hardwick, Wen Hu, Anoushka Joglekar, Li Fan, Paul G. Collier, Careen Foord, Jennifer Balacco, Samantha Lanjewar, Maureen McGuirk Sampson, Frank Koopmans, Andrey D. Prjibelski, Alla Mikheenko, Natan Belchikov, Julien Jarroux, Anne Bergstrom Lucas, Miklós Palkovits, Wenjie Luo, Teresa A. Milner, Lishomwa C. Ndhlovu, August B. Smit, John Q. Trojanowski, Virginia M. Y. Lee, Olivier Fedrigo, Steven A. Sloan, Dóra Tombácz, M. Elizabeth Ross, Erich Jarvis, Zsolt Boldogkői, Li Gan, Hagen U. Tilgner
Publikováno v:
Nature Biotechnology, 40(7), 1082-1092. Nature Publishing Group
Hardwick, S A, Hu, W, Joglekar, A, Fan, L, Collier, P G, Foord, C, Balacco, J, Lanjewar, S, Sampson, M M G, Koopmans, F, Prjibelski, A D, Mikheenko, A, Belchikov, N, Jarroux, J, Lucas, A B, Palkovits, M, Luo, W, Milner, T A, Ndhlovu, L C, Smit, A B, Trojanowski, J Q, Lee, V M Y, Fedrigo, O, Sloan, S A, Tombácz, D, Ross, M E, Jarvis, E, Boldogkői, Z, Gan, L & Tilgner, H U 2022, ' Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue ', Nature Biotechnology, vol. 40, no. 7, pp. 1082-1092 . https://doi.org/10.1038/s41587-022-01231-3
Hardwick, S A, Hu, W, Joglekar, A, Fan, L, Collier, P G, Foord, C, Balacco, J, Lanjewar, S, Sampson, M M G, Koopmans, F, Prjibelski, A D, Mikheenko, A, Belchikov, N, Jarroux, J, Lucas, A B, Palkovits, M, Luo, W, Milner, T A, Ndhlovu, L C, Smit, A B, Trojanowski, J Q, Lee, V M Y, Fedrigo, O, Sloan, S A, Tombácz, D, Ross, M E, Jarvis, E, Boldogkői, Z, Gan, L & Tilgner, H U 2022, ' Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue ', Nature Biotechnology, vol. 40, no. 7, pp. 1082-1092 . https://doi.org/10.1038/s41587-022-01231-3
Single-nuclei RNA sequencing characterizes cell types at the gene level. However, compared to single-cell approaches, many single-nuclei cDNAs are purely intronic, lack barcodes and hinder the study of isoforms. Here we present single-nuclei isoform
Autor:
Anoushka Joglekar, Wen Hu, Bei Zhang, Oleksandr Narykov, Mark Diekhans, Jennifer Balacco, Lishomwa C Ndhlovu, Teresa A Milner, Olivier Fedrigo, Erich D Jarvis, Gloria Sheynkman, Dmitry Korkin, M. Elizabeth Ross, Hagen U. Tilgner
RNA isoforms influence cell identity and function. Until recently, technological limitations prevented a genome-wide appraisal of isoform influence on cell identity in various parts of the brain. Using enhanced long-read single-cell isoform sequencin
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::00cf03d4f20784df665358b6066d9981
https://doi.org/10.1101/2023.04.02.535281
https://doi.org/10.1101/2023.04.02.535281
Autor:
Jacqueline Smith, James M. Alfieri, Nick Anthony, Peter Arensburger, Giridhar N. Athrey, Jennifer Balacco, Adam Balic, Philippe Bardou, Paul Barela, Yves Bigot, Heath Blackmon, Pavel M. Borodin, Rachel Carroll, Meya C. Casono, Mathieu Charles, Hans Cheng, Maddie Chiodi, Lacey Cigan, Lyndon M. Coghill, Richard Crooijmans, Neelabja Das, Sean Davey, Asya Davidian, Fabien Degalez, Jack M. Dekkers, Martijn Derks, Abigail B. Diack, Appolinaire Djikeng, Yvonne Drechsler, Alexander Dyomin, Olivier Fedrigo, Steven R. Fiddaman, Giulio Formenti, Laurent A.F. Frantz, Janet E. Fulton, Elena Gaginskaya, Svetlana Galkina, Rodrigo A. Gallardo, Johannes Geibel, Almas Gheyas, Cyrill John P. Godinez, Ashton Goodell, Jennifer A. M. Graves, Daren K. Griffin, Bettina Haase, Jian-Lin Han, Olivier Hanotte, Lindsay J. Henderson, Zhuo-Cheng Hou, Kerstin Howe, Lan Huynh, Evans Ilatsia, Erich Jarvis, Sarah M. Johnson, Jim Kaufman, Terra Kelly, Steve Kemp, Colin Kern, Jacob H. Keroack, Christophe Klopp, Sandrine Lagarrigue, Susan J. Lamont, Margaret Lange, Anika Lanke, Denis M. Larkin, Greger Larson, John King N. Layos, Ophélie Lebrasseur, Lyubov P. Malinovskaya, Rebecca J. Martin, Maria Luisa Martin Cerezo, Andrew S. Mason, Fiona M. McCarthy, Michael J. McGrew, Jacquelyn Mountcastle, Christine Kamidi Muhonja, William Muir, Kévin Muret, Terence Murphy, Ismael Ng’ang’a, Masahide Nishibori, Rebecca E. O’Connor, Moses Ogugo, Ron Okimoto, Ochieng Ouko, Hardip R. Patel, Francesco Perini, María Ines Pigozzi, Krista C. Potter, Peter D. Price, Christian Reimer, Edward S. Rice, Nicolas Rocos, Thea F. Rogers, Perot Saelao, Jens Schauer, Robert Schnabel, Valerie Schneider, Henner Simianer, Adrian Smith, Mark P. Stevens, Kyle Stiers, Christian Keambou Tiambo, Michele Tixier-Boichard, Anna A. Torgasheva, Alan Tracey, Clive A. Tregaskes, Lonneke Vervelde, Ying Wang, Wesley C. Warren, Paul D. Waters, David Webb, Steffen Weigend, Anna Wolc, Alison E. Wright, Dominic Wright, Zhou Wu, Masahito Yamagata, Chentao Yang, Zhong-Tao Yin, Michelle C. Young, Guojie Zhang, Bingru Zhao, Huaijun Zhou
Publikováno v:
Smith, J, Alfieri, J M, Anthony, N, Arensburger, P, Athrey, G N, Balacco, J, Balic, A, Bardou, P, Barela, P, Bigot, Y, Blackmon, H, Borodin, P M, Carroll, R, Casono, M C, Charles, M, Cheng, H, Chiodi, M, Cigan, L, Coghill, L M, Crooijmans, R, Das, N, Davey, S, Davidian, A, Degalez, F, Dekkers, J M, Derks, M, Diack, A B, Djikeng, A, Drechsler, Y, Dyomin, A, Fedrigo, O, Fiddaman, S R, Formenti, G, Frantz, L A F, Fulton, J E, Gaginskaya, E, Galkina, S, Gallardo, R A, Geibel, J, Gheyas, A, Godinez, C J P, Goodell, A, Graves, J A M, Griffin, D K, Haase, B, Han, J-L, Hanotte, O, Henderson, L J, Hou, Z-C, Howe, K, Huynh, L, Ilatsia, E, Jarvis, E, Johnson, S M, Kaufman, J, Kelly, T, Kemp, S, Kern, C, Keroack, J H, Klopp, C, Lagarrigue, S, Lamont, S J, Lange, M, Lanke, A, Larkin, D M, Larson, G, Layos, J K N, Lebrasseur, O, Malinovskaya, L P, Martin, R J, Martin Cerezo, M L, Mason, A S, McCarthy, F M, McGrew, M J, Mountcastle, J, Muhonja, C K, Muir, W, Muret, K, Murphy, T, Ng'ang'a, I, Nishibori, M, O'Connor, R E, Ogugo, M, Okimoto, R, Ouko, O, Patel, H R, Perini, F, Pigozzi, M I, Potter, K C, Price, P D, Reimer, C, Rice, E S, Rocos, N, Rogers, T F, Saelao, P, Schauer, J, Schnabel, R, Schneider, V, Simianer, H, Smith, A, Stevens, M P, Stiers, K, Tiambo, C K, Tixier-Boichard, M, Torgasheva, A A, Tracey, A, Tregaskes, C A, Vervelde, L, Wang, Y, Warren, W C, Waters, P D, Webb, D, Weigend, S, Wolc, A, Wright, A E, Wright, D, Wu, Z, Yamagata, M, Yang, C, Yin, Z-T, Young, M C, Zhang, G, Zhao, B & Zhou, H 2023, ' Fourth Report on Chicken Genes and Chromosomes 2022 ', Cytogenetic and Genome Research . https://doi.org/10.1159/000529376
none
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0d6c6fa4de9d6018915981e488a098d2
https://hdl.handle.net/20.500.11820/3ef65ddc-1fc9-4a4e-bd18-30c687cba7b7
https://hdl.handle.net/20.500.11820/3ef65ddc-1fc9-4a4e-bd18-30c687cba7b7
Autor:
Simona Secomandi, Guido Roberto Gallo, Marcella Sozzoni, Alessio Iannucci, Elena Galati, Linelle Abueg, Jennifer Balacco, Manuela Caprioli, William Chow, Claudio Ciofi, Joanna Collins, Olivier Fedrigo, Luca Ferretti, Arkarachai Fungtammasan, Bettina Haase, Kerstin Howe, Woori Kwak, Gianluca Lombardo, Patrick Masterson, Graziella Messina, Anders Pape Møller, Jacquelyn Mountcastle, Timothy A. Mousseau, Joan Ferrer-Obiol, Anna Olivieri, Arang Rhie, Diego Rubolini, Marielle Saclier, Roscoe Stanyon, David Stucki, Françoise Thibaud-Nissen, James Torrance, Antonio Torroni, Kristina Weber, Roberto Ambrosini, Andrea Bonisoli-Alquati, Erich D. Jarvis, Luca Gianfranceschi, Giulio Formenti
Insights into the evolution of non-model organisms are often limited by the lack of reference genomes. As part of the Vertebrate Genomes Project, we present a new reference genome and a pangenome produced with High-Fidelity long reads for the barn sw
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::82a058f0319f61cf953d1b6e1afa3a68
https://doi.org/10.1101/2022.03.28.486082
https://doi.org/10.1101/2022.03.28.486082