Zobrazeno 1 - 10
of 26
pro vyhledávání: '"Jeffrey J Headd"'
Autor:
Jeong Joo Kim, Darren E Casteel, Gilbert Huang, Taek Hun Kwon, Ronnie Kuo Ren, Peter Zwart, Jeffrey J Headd, Nicholas Gene Brown, Dar-Chone Chow, Timothy Palzkill, Choel Kim
Publikováno v:
PLoS ONE, Vol 6, Iss 4, p e18413 (2011)
Cyclic GMP-dependent protein kinases (PKGs) are central mediators of the NO-cGMP signaling pathway and phosphorylate downstream substrates that are crucial for regulating smooth muscle tone, platelet activation, nociception and memory formation. As o
Externí odkaz:
https://doaj.org/article/e1dd73eefa1a4f26b78f460e8b8a54e8
Autor:
W. Bryan Arendall, Paul D. Adams, Lizbeth L. Videau, Swati Jain, Jack Snoeyink, Steven M. Lewis, Bradley J. Hintze, Daniel A. Keedy, Vishal Verma, Lindsay N. Deis, Jeffrey J. Headd, Michael G. Prisant, David S. Richardson, Nigel W. Moriarty, Simon C. Lovell, Jane S. Richardson, Vincent B. Chen, Christopher J. Williams
Publikováno v:
Protein Science. 27:293-315
This paper describes the current update on macromolecular model validation services that are provided at the MolProbity website, emphasizing changes and additions since the previous review in 2010. There have been many infrastructure improvements, in
Autor:
John B. Pracyk, A.M. Menzie, Samir Bhattacharyya, Kevin J. McGuire, Jeffrey J. Headd, Jason Lerner, Katherine Etter, Jill Ruppenkamp
Publikováno v:
Spine. 45(2)
STUDY DESIGN Retrospective administrative claims database analysis. OBJECTIVE Identify distinct presurgery health care resource utilization (HCRU) patterns among posterior lumbar spinal fusion patients and quantify their association with postsurgery
Autor:
Jeffrey J Headd, Kathy N. Williams, Jacqueline B Plesset, Ashley A. Lento, Rosemarie Mick, Andres J. Klein-Szanto, Priya Chatterji, Rei Mizuno, Anil K. Rustgi, Sarah F. Andres, Kathryn E. Hamilton
Publikováno v:
Carcinogenesis
The RNA-binding protein insulin-like growth factor 2 mRNA binding protein 1 (IMP1) is overexpressed in colorectal cancer (CRC); however, evidence for a direct role for IMP1 in CRC metastasis is lacking. IMP1 is regulated by let-7 microRNA, which bind
Autor:
Dorothee Liebschner, Pavel V. Afonine, Nathaniel Echols, Jeffrey J. Headd, Nigel W. Moriarty, Paul D. Adams, Billy K. Poon, Herbert E. Klei
Publikováno v:
Protein science : a publication of the Protein Society, vol 27, iss 1
Moriarty, NW; Liebschner, D; Klei, HE; Echols, N; Afonine, PV; Headd, JJ; et al.(2018). Interactive comparison and remediation of collections of macromolecular structures. Protein Science, 27(1), 182-194. doi: 10.1002/pro.3296. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/4wx6r55p
Moriarty, NW; Liebschner, D; Klei, HE; Echols, N; Afonine, PV; Headd, JJ; et al.(2018). Interactive comparison and remediation of collections of macromolecular structures. Protein Science, 27(1), 182-194. doi: 10.1002/pro.3296. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/4wx6r55p
© 2017 The Protein Society Often similar structures need to be compared to reveal local differences throughout the entire model or between related copies within the model. Therefore, a program to compare multiple structures and enable correction any
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8ea9c822beedde558e0bf690299f3898
https://escholarship.org/uc/item/4wx6r55p
https://escholarship.org/uc/item/4wx6r55p
Autor:
Christopher J, Williams, Jeffrey J, Headd, Nigel W, Moriarty, Michael G, Prisant, Lizbeth L, Videau, Lindsay N, Deis, Vishal, Verma, Daniel A, Keedy, Bradley J, Hintze, Vincent B, Chen, Swati, Jain, Steven M, Lewis, W Bryan, Arendall, Jack, Snoeyink, Paul D, Adams, Simon C, Lovell, Jane S, Richardson, David C, Richardson
Publikováno v:
Protein science : a publication of the Protein Society. 27(1)
This paper describes the current update on macromolecular model validation services that are provided at the MolProbity website, emphasizing changes and additions since the previous review in 2010. There have been many infrastructure improvements, in
Autor:
Jeffrey J. Headd, Paul D. Adams, Pavel V. Afonine, Gábor Bunkóczi, Nigel W. Moriarty, Thomas C. Terwilliger, Herbert E. Klei, Randy J. Read, Nathaniel Echols, Airlie J. McCoy, Robert D. Oeffner
Publikováno v:
Acta Crystallographica Section D: Biological Crystallography
A software system for automated protein–ligand crystallography has been implemented in the Phenix suite. This significantly reduces the manual effort required in high-throughput crystallographic studies.
High-throughput drug-discovery and mech
High-throughput drug-discovery and mech
Autor:
Airlie J. McCoy, Vincent B. Chen, Randy J. Read, Gábor Bunkóczi, Pavel V. Afonine, Jeffrey J. Headd, David S. Richardson, Nathaniel Echols, Paul D. Adams, Nigel W. Moriarty, Thomas C. Terwilliger, Ralf W. Grosse-Kunstleve, Jane S. Richardson
Publikováno v:
Journal of Applied Crystallography
Journal of applied crystallography, vol 45, iss Pt 3
Echols, N; Grosse-Kunstleve, RW; Afonine, PV; Bunkóczi, G; Chen, VB; Headd, JJ; et al.(2012). Graphical tools for macromolecular crystallography in PHENIX. Journal of Applied Crystallography, 45(3), 581-586. doi: 10.1107/S0021889812017293. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/2t60j5xj
Journal of applied crystallography, vol 45, iss Pt 3
Echols, N; Grosse-Kunstleve, RW; Afonine, PV; Bunkóczi, G; Chen, VB; Headd, JJ; et al.(2012). Graphical tools for macromolecular crystallography in PHENIX. Journal of Applied Crystallography, 45(3), 581-586. doi: 10.1107/S0021889812017293. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/2t60j5xj
The foundations and current features of a widely used graphical user interface for macromolecular crystallography are described.
A new Python-based graphical user interface for the PHENIX suite of crystallography software is described. This inte
A new Python-based graphical user interface for the PHENIX suite of crystallography software is described. This inte
Autor:
Pavel V. Afonine, Paul D. Adams, David S. Richardson, Jane S. Richardson, Nathaniel Echols, Jeffrey J. Headd, Ralf W. Grosse-Kunstleve, Vincent B. Chen, Nigel W. Moriarty
Publikováno v:
Acta Crystallographica Section D: Biological Crystallography
Headd, JJ; Echols, N; Afonine, PV; Grosse-Kunstleve, RW; Chen, VB; Moriarty, NW; et al.(2012). Use of knowledge-based restraints in phenix.refine to improve macromolecular refinement at low resolution. Acta Crystallographica Section D: Biological Crystallography, 68(4), 381-390. doi: 10.1107/S0907444911047834. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/88p5c2p4
Acta crystallographica. Section D, Biological crystallography, vol 68, iss Pt 4
Headd, JJ; Echols, N; Afonine, PV; Grosse-Kunstleve, RW; Chen, VB; Moriarty, NW; et al.(2012). Use of knowledge-based restraints in phenix.refine to improve macromolecular refinement at low resolution. Acta Crystallographica Section D: Biological Crystallography, 68(4), 381-390. doi: 10.1107/S0907444911047834. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/88p5c2p4
Acta crystallographica. Section D, Biological crystallography, vol 68, iss Pt 4
Recent developments in PHENIX are reported that allow the use of reference-model torsion restraints, secondary-structure hydrogen-bond restraints and Ramachandran restraints for improved macromolecular refinement in phenix.refine at low resolution.
Autor:
Alexandre Urzhumtsev, Peter H. Zwart, Ralf W. Grosse-Kunstleve, Jeffrey J. Headd, Jane S. Richardson, David S. Richardson, Nigel W. Moriarty, Vincent B. Chen, Pavel V. Afonine, Paul D. Adams
Publikováno v:
Journal of Applied Crystallography
Application of phenix.model_vs_data to the contents of the Protein Data Bank shows that the vast majority of deposited structures can be automatically analyzed to reproduce the reported quality statistics. However, the small fraction of structures th