Zobrazeno 1 - 10
of 26
pro vyhledávání: '"Jean-Simon Brouard"'
Autor:
Olivier Ariel, Jean-Simon Brouard, Andrew Marete, Filippo Miglior, Eveline Ibeagha-Awemu, Nathalie Bissonnette
Publikováno v:
BMC Genomics, Vol 22, Iss 1, Pp 1-15 (2021)
Abstract Background Mycobacterium avium ssp. paratuberculosis (MAP) is the causative agent of paratuberculosis, or Johne’s disease (JD), an incurable bovine disease. The evidence for susceptibility to MAP disease points to multiple interacting fact
Externí odkaz:
https://doaj.org/article/b6806c374f3240f48751a61a257892f6
Publikováno v:
Journal of Animal Science and Biotechnology, Vol 10, Iss 1, Pp 1-6 (2019)
Abstract The Genome Analysis Toolkit (GATK) is a popular set of programs for discovering and genotyping variants from next-generation sequencing data. The current GATK recommendation for RNA sequencing (RNA-seq) is to perform variant calling from ind
Externí odkaz:
https://doaj.org/article/42e49b9ccba649c6a1ec283b477bb2b0
Publikováno v:
BMC Genetics, Vol 18, Iss 1, Pp 1-14 (2017)
Abstract Background Genotyping-by-sequencing (GBS) has emerged as a powerful and cost-effective approach for discovering and genotyping single-nucleotide polymorphisms. The GBS technique was largely used in crop species where its low sequence coverag
Externí odkaz:
https://doaj.org/article/4d36ba7bc12941de88a4654e1588c695
Publikováno v:
PeerJ, Vol 4, p e2627 (2016)
Background The chloroplast genome sustained extensive changes in architecture during the evolution of the Chlorophyceae, a morphologically and ecologically diverse class of green algae belonging to the Chlorophyta; however, the forces driving these c
Externí odkaz:
https://doaj.org/article/24c0d503e22940f9b5d456f3a42a3d9e
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 2493
The Genome Analysis Toolkit (GATK) developed at the Broad Institute provides state-of-the-art pipelines for germline and somatic variant discovery and genotyping. Unfortunately, the fully validated GATK pipeline for calling variant on RNAseq data is
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::5fef4dc6a4d4eec3dc70e9343445d336
https://pubmed.ncbi.nlm.nih.gov/35751817
https://pubmed.ncbi.nlm.nih.gov/35751817
Publikováno v:
Journal of Animal Science and Biotechnology, Vol 10, Iss 1, Pp 1-6 (2019)
Journal of Animal Science and Biotechnology
Journal of Animal Science and Biotechnology
The Genome Analysis Toolkit (GATK) is a popular set of programs for discovering and genotyping variants from next-generation sequencing data. The current GATK recommendation for RNA sequencing (RNA-seq) is to perform variant calling from individual s
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::18a19d243e8f70d76851718195f6e9b6
http://link.springer.com/article/10.1186/s40104-019-0359-0
http://link.springer.com/article/10.1186/s40104-019-0359-0
Autor:
Andrew Marete, Nathalie Bissonnette, Filippo Miglior, Olivier Ariel, Eveline M. Ibeagha-Awemu, Jean-Simon Brouard
Publikováno v:
BMC Genomics
BMC Genomics, Vol 22, Iss 1, Pp 1-15 (2021)
BMC Genomics, Vol 22, Iss 1, Pp 1-15 (2021)
Background Mycobacterium avium ssp. paratuberculosis (MAP) is the causative agent of paratuberculosis, or Johne’s disease (JD), an incurable bovine disease. The evidence for susceptibility to MAP disease points to multiple interacting factors, incl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::252b75ee904b7cca9e372eb1f704e4ea
http://europepmc.org/articles/PMC7938594
http://europepmc.org/articles/PMC7938594
Autor:
Ariel, Olivier, Jean-Simon Brouard, Marete, Andrew, Miglior, Filippo, Ibeagha-Awemu, Eveline, Bissonnette, Nathalie
Additional file 2: Supplementary Figure 2. Principal component analysis (PCA) of the 50 datasets of DNA variant. The PCA plots of each cow from both JD groups were drawn using the stats R package. All R analyses and graphs were processed in RStudio v
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::24809df56701f2f797095f3f9c270076
Autor:
Ariel, Olivier, Jean-Simon Brouard, Marete, Andrew, Miglior, Filippo, Ibeagha-Awemu, Eveline, Bissonnette, Nathalie
Additional file 1: Supplementary Figure 1. Schematic representation of the approach used to generate SNPs for GWAS analysis. The Bovine 50 K DNAchip data were imputed to the BovineHD using a reference panel of 3300 HD animals. After filtering to gene
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::18e40cfe86e5861595e05cf883b8d6e0
Autor:
Antony T. Vincent, Patrick Lagüe, Steve J. Charette, Yves Bourbonnais, Stéphane M. Gagné, Michel Guertin, Hélène Deveau, Arnaud Droit, Jean-Simon Brouard, Louis Rathier, Claude Lemieux
Publikováno v:
Biochemistry and Molecular Biology Education. 46:31-38
A recent scientific discipline, bioinformatics, defined as using informatics for the study of biological problems, is now a requirement for the study of biological sciences. Bioinformatics has become such a powerful and popular discipline that severa
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::15ef766b2c89769dd4246e78712df95b
https://doi.org/10.1002/bmb.21086
https://doi.org/10.1002/bmb.21086