Zobrazeno 1 - 10
of 65
pro vyhledávání: '"Jean-François Gibrat"'
Autor:
Jean-François Gibrat
Publikováno v:
BMC Bioinformatics, Vol 19, Iss 1, Pp 1-5 (2018)
Abstract Background Third generation sequencing technologies generate long reads that exhibit high error rates, in particular for insertions and deletions which are usually the most difficult errors to cope with. The only exact algorithm capable of a
Externí odkaz:
https://doaj.org/article/c5bf69f1fd334726b44b984487a3f112
Autor:
Jean-François Gibrat
Publikováno v:
Biophysics and Physicobiology, Vol 16 (2019)
This paper presents a preliminary work consisting of two contributions. The first one is the design of a very efficient algorithm based on an “Overlap-Layout-Consensus” (OLC) graph to assemble the long reads provided by 3rd generation technologie
Externí odkaz:
https://doaj.org/article/f4ddaa2d898e40be9523a06b658781f0
Autor:
Eric Dugat-Bony, Cécile Straub, Aurélie Teissandier, Djamila Onésime, Valentin Loux, Christophe Monnet, Françoise Irlinger, Sophie Landaud, Marie-Noëlle Leclercq-Perlat, Pascal Bento, Sébastien Fraud, Jean-François Gibrat, Julie Aubert, Frédéric Fer, Eric Guédon, Nicolas Pons, Sean Kennedy, Jean-Marie Beckerich, Dominique Swennen, Pascal Bonnarme
Publikováno v:
PLoS ONE, Vol 10, Iss 4, p e0124360 (2015)
Cheese ripening is a complex biochemical process driven by microbial communities composed of both eukaryotes and prokaryotes. Surface-ripened cheeses are widely consumed all over the world and are appreciated for their characteristic flavor. Microbia
Externí odkaz:
https://doaj.org/article/2fc98956513f420aa76a0cc1db491761
Autor:
Christophe Monnet, Valentin Loux, Jean-François Gibrat, Eric Spinnler, Valérie Barbe, Benoit Vacherie, Frederick Gavory, Edith Gourbeyre, Patricia Siguier, Michaël Chandler, Rayda Elleuch, Françoise Irlinger, Tatiana Vallaeys
Publikováno v:
PLoS ONE, Vol 5, Iss 11, p e15489 (2010)
Arthrobacter arilaitensis is one of the major bacterial species found at the surface of cheeses, especially in smear-ripened cheeses, where it contributes to the typical colour, flavour and texture properties of the final product. The A. arilaitensis
Externí odkaz:
https://doaj.org/article/3bdb141d06de4215a72933db769e5bfd
Autor:
Hélène Falentin, Stéphanie-Marie Deutsch, Gwenaël Jan, Valentin Loux, Anne Thierry, Sandrine Parayre, Marie-Bernadette Maillard, Julien Dherbécourt, Fabien J Cousin, Julien Jardin, Patricia Siguier, Arnaud Couloux, Valérie Barbe, Benoit Vacherie, Patrick Wincker, Jean-François Gibrat, Claude Gaillardin, Sylvie Lortal
Publikováno v:
PLoS ONE, Vol 5, Iss 7, p e11748 (2010)
BackgroundPropionibacterium freudenreichii is essential as a ripening culture in Swiss-type cheeses and is also considered for its probiotic use. This species exhibits slow growth, low nutritional requirements, and hardiness in many habitats. It belo
Externí odkaz:
https://doaj.org/article/aa36fd3e407f41fa9fbf9daa6697cc86
Autor:
Lieven Sterck, Brane Leskošek, Lucile Soler, Cederic Notredame, Erik Hjerde, Stéphanie Bocs, Mahesh Binzer-Panchal, Laurent Bouri, Henrik Lantz, Joelle Amselem, Christophe Klopp, Jean-François Gibrat, Olga Vinnere Pettersson, Salvadors Capella-Gutierrez, Anna Vlasova, Victoria Dominguez Del Angel
Publikováno v:
F1000Research
F1000Research, Faculty of 1000, 2018, 7, pp.148-19. ⟨10.12688/f1000research.13598.1⟩
Recercat. Dipósit de la Recerca de Catalunya
instname
F1000Research, 2018, 7, pp.148-19. ⟨10.12688/f1000research.13598.1⟩
F1000Research (7), 19 p.. (2018)
F1000RESEARCH
UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)
F1000Research, Faculty of 1000, 2018, 7, pp.148-19. ⟨10.12688/f1000research.13598.1⟩
Recercat. Dipósit de la Recerca de Catalunya
instname
F1000Research, 2018, 7, pp.148-19. ⟨10.12688/f1000research.13598.1⟩
F1000Research (7), 19 p.. (2018)
F1000RESEARCH
UPCommons. Portal del coneixement obert de la UPC
Universitat Politècnica de Catalunya (UPC)
As a part of the ELIXIR-EXCELERATE efforts in capacity building, we present here 10 steps to facilitate researchers getting started in genome assembly and genome annotation. The guidelines given are broadly applicable, intended to be stable over time
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6eb9bd72a8a17b6421c95a4a3329fa67
http://hdl.handle.net/10230/42860
http://hdl.handle.net/10230/42860
Autor:
Christophe Blanchet, Begüm İlke Zilci, Axel Küpper, Jean-François Gibrat, Yuri Demchenko, Fatih Turkmen, Mathias Slawik
Publikováno v:
Conference proceedings GECON 2016
13th International Conference, GECON 2
13th International Conference, GECON 2, Sep 2016, Athens, Greece
Economics of Grids, Clouds, Systems, and Services ISBN: 9783319619194
GECON
13th International Conference, GECON 2
13th International Conference, GECON 2, Sep 2016, Athens, Greece
Economics of Grids, Clouds, Systems, and Services ISBN: 9783319619194
GECON
Contemporary multi-cloud application deployments require increasingly complex security architectures, especially within federated environments. However, increased complexity often leads to higher efforts and raised costs for managing and securing tho
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f7f07b5da46622344bfae90c05d94ae6
https://hal.archives-ouvertes.fr/hal-01562305
https://hal.archives-ouvertes.fr/hal-01562305
Autor:
Annie Gendrault, Sylvie Thérond, Pierre Nicolas, Marc Rugeri, Valentin Loux, Jean-François Gibrat, Thomas Lacroix
Publikováno v:
Bioinformatics
Bioinformatics, Oxford University Press (OUP), 2016, 32 (7), pp.1083-1084. ⟨10.1093/bioinformatics/btv689⟩
Bioinformatics, Oxford University Press (OUP), 2016, 32 (7), pp.1083-1084. ⟨10.1093/bioinformatics/btv689⟩
Motivation: High-throughput sequencing technologies provide access to an increasing number of bacterial genomes. Today, many analyses involve the comparison of biological properties among many strains of a given species, or among species of a particu
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0631114555f8619c0a48f2582a6b0eed
https://hal.inrae.fr/hal-02630699
https://hal.inrae.fr/hal-02630699
Autor:
M. Biancani, D. Gallico, Jean-François Gibrat, M. Kourkouli, J. I. A. Baranda, Christophe Blanchet, M. Bedri, D. Hacker
Publikováno v:
2016 5th IEEE International Conference on Cloud Networking (Cloudnet)
CloudNet
CloudNet
Multi-cloud applications delivered acrossheterogeneous public cloud service providers poses differenttechnical and operational challenges in terms of resourcebrokering, integration, implementation of security trusts, etc. Inthis paper we describe the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b5191a4e58aabd80140af0697b1c1ce8
Autor:
Jean Garnier, Chin-Hsien Tai, Jean-François Gibrat, Peter J. Munson, Vichetra Sam, Byungkook Lee
Publikováno v:
Proteins: Structure, Function, and Bioinformatics. 79:853-866
Domains are basic units of protein structure and essential for exploring protein fold space and structure evolution. With the structural genomics initiative, the number of protein structures in the Protein Databank (PDB) is increasing dramatically an
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ac2e5f5c8275f4379a530448426601b1
https://doi.org/10.1002/prot.22923
https://doi.org/10.1002/prot.22923