Zobrazeno 1 - 10
of 10
pro vyhledávání: '"Jay W. Kim"'
Autor:
María G. Balbuena-Alonso, Gerardo Cortés-Cortés, Jay W. Kim, Patricia Lozano-Zarain, Manel Camps, Rosa del Carmen Rocha-Gracia
Publikováno v:
Plasmid.
The link between E. coli strains contaminating foods and human disease is unclear, with some reports supporting a direct transmission of pathogenic strains via food and others highlighting their role as reservoirs for resistance and virulence genes.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5a97c2145de62de363745f20ef2b50a5
https://pubmed.ncbi.nlm.nih.gov/36130651
https://pubmed.ncbi.nlm.nih.gov/36130651
Autor:
Jay W Kim, Susan H Brawley, Simon Prochnik, Mansi Chovatia, Jane Grimwood, Jerry Jenkins, Kurt LaButti, Konstantinos Mavromatis, Matt Nolan, Matthew Zane, Jeremy Schmutz, John W Stiller, Arthur R Grossman
Publikováno v:
PLoS ONE, Vol 11, Iss 3, p e0151883 (2016)
Porphyra is a macrophytic red alga of the Bangiales that is important ecologically and economically. We describe the genomes of three bacteria in the phylum Planctomycetes (designated P1, P2 and P3) that were isolated from blades of Porphyra umbilica
Externí odkaz:
https://doaj.org/article/19af51fc653f40eaa3b0177908bb6717
Publikováno v:
EcoSal Plus
EcoSal Plus, vol 9, iss 1
EcoSal Plus, vol 9, iss 1
Plasmids are autonomously replicating sequences that help cells adapt to diverse stresses. Theta plasmids are the most frequent plasmid class in enterobacteria. They co-opt two host replication mechanisms: replication at oriC , a DnaA-dependent pathw
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::95c252ba45f7b7ad6df499977e32de7b
https://pubmed.ncbi.nlm.nih.gov/33210586
https://pubmed.ncbi.nlm.nih.gov/33210586
Autor:
Jeremy Schmutz, John T. Singer, John W. Stiller, Simon Prochnik, Daniel S. Rokhsar, Juying Yan, Alison G. Smith, Yong Zou, Yi Peng, Cheong Xin Chan, Huan Qiu, Tara N. Marriage, Beverley R. Green, Crysten E. Blaby-Haas, Katherine E. Helliwell, Jasmyn Pangilinan, Elizabeth Ficko-Blean, Jonas Collén, Jane Grimwood, Shengqiang Shu, Susan H. Brawley, Glen L. Wheeler, Erika Lindquist, Yuanyu Cao, Bradley J. S. C. Olson, Brittany N. Sprecher, Yacine Badis, Steven J. Karpowicz, Charles Yarish, Volker Wagner, Jerry Jenkins, Simon M. Dittami, Yunyun Zhuang, Senjie Lin, Debashish Bhattacharya, Ulrich Johan Kudahl, Anita S. Klein, Nicolas A. Blouin, Zhi-Yong Wang, Wenfei Wang, Kerrie Barry, Gurvan Michel, Simone Zäuner-Riek, Claire M. M. Gachon, Martin Lohr, Jay W. Kim, Arthur R. Grossman, Maria Mittag, Juliet Brodie, Holly V. Goodson
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America, vol 114, iss 31
Proceedings of the National Academy of Sciences of the United States of America
Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences, 2017, 114 (31), pp.E6361-E6370. ⟨10.1073/pnas.1703088114⟩
Brawley, SH; Blouin, NA; Ficko-Blean, E; Wheeler, GL; Lohr, M; Goodson, HV; et al.(2017). Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta). Proceedings of the National Academy of Sciences of the United States of America, 114(31), E6361-E6370. doi: 10.1073/pnas.1703088114. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/5cw666wc
Proceedings of the National Academy of Sciences of the United States of America
Proceedings of the National Academy of Sciences of the United States of America, National Academy of Sciences, 2017, 114 (31), pp.E6361-E6370. ⟨10.1073/pnas.1703088114⟩
Brawley, SH; Blouin, NA; Ficko-Blean, E; Wheeler, GL; Lohr, M; Goodson, HV; et al.(2017). Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta). Proceedings of the National Academy of Sciences of the United States of America, 114(31), E6361-E6370. doi: 10.1073/pnas.1703088114. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/5cw666wc
Porphyra umbilicalis (laver) belongs to an ancient group of red algae (Bangiophyceae), is harvested for human food, and thrives in the harsh conditions of the upper intertidal zone. Here we present the 87.7-Mbp haploid Porphyra genome (65.8% G + C co
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c7a18b1725bbb757e4097a79efd19157
https://escholarship.org/uc/item/5cw666wc
https://escholarship.org/uc/item/5cw666wc
Autor:
Susan H, Brawley, Nicolas A, Blouin, Elizabeth, Ficko-Blean, Glen L, Wheeler, Martin, Lohr, Holly V, Goodson, Jerry W, Jenkins, Crysten E, Blaby-Haas, Katherine E, Helliwell, Cheong Xin, Chan, Tara N, Marriage, Debashish, Bhattacharya, Anita S, Klein, Yacine, Badis, Juliet, Brodie, Yuanyu, Cao, Jonas, Collén, Simon M, Dittami, Claire M M, Gachon, Beverley R, Green, Steven J, Karpowicz, Jay W, Kim, Ulrich Johan, Kudahl, Senjie, Lin, Gurvan, Michel, Maria, Mittag, Bradley J S C, Olson, Jasmyn L, Pangilinan, Yi, Peng, Huan, Qiu, Shengqiang, Shu, John T, Singer, Alison G, Smith, Brittany N, Sprecher, Volker, Wagner, Wenfei, Wang, Zhi-Yong, Wang, Juying, Yan, Charles, Yarish, Simone, Zäuner-Riek, Yunyun, Zhuang, Yong, Zou, Erika A, Lindquist, Jane, Grimwood, Kerrie W, Barry, Daniel S, Rokhsar, Jeremy, Schmutz, John W, Stiller, Arthur R, Grossman, Simon E, Prochnik
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America. 114(31)
Fossil evidence shows that red algae (Rhodophyta) are one of the most ancient multicellular lineages. Their ecological, evolutionary, and commercial importance notwithstanding, few red algal nuclear genomes have been sequenced. Our analyses of the Po
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::a69370e5784e176dc25d31c7239aa674
https://pubmed.ncbi.nlm.nih.gov/28716924
https://pubmed.ncbi.nlm.nih.gov/28716924
Autor:
Jo Anne Holley, Kaitlyn A. Mathis, Marie-Julie Favé, Reed M. Johnson, Richard Benton, Abderrahman Khila, Joseph G. Laird, Juergen Gadau, Carson Holt, Martin Helmkampf, Vincent Croset, Elizabeth Cash, Eran Elhaik, Aleksey V. Zimin, Kirk J. Grubbs, Ellen van Wilgenburg, Mark Yandell, Ehab Abouheif, Jennifer E. Placek, Brian R. Johnson, Hugh M. Robertson, Rick P. Overson, Joseph A. Moeller, Hao Hu, Chris Smith, Garret Suen, Kimberly K. O. Walden, Christine G. Elsik, Elissa L. Suhr, Darren E. Hagen, Dan Graur, Cameron R. Currie, Shu Tao, Rin Nakamura, Jay W. Kim, Monica Munoz-Torres, Justin T. Reese, Joshua D. Gibson, Lumi Viljakainen, Alexander L. Wild, Candice W. Torres, Ana Sofia Ibarraran Viniegra, Rajendhran Rajakumar, James A. Yorke, Vilaiwan M. Fernandes, Marguerite C. Murphy, Andrew V. Suarez, Neil D. Tsutsui, Christopher D. Smith, Surabhi Nigam
Ants are some of the most abundant and familiar animals on Earth, and they play vital roles in most terrestrial ecosystems. Although all ants are eusocial, and display a variety of complex and fascinating behaviors, few genomic resources exist for th
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::412a33899c6152bd5e9ce4dbf526d0bd
https://ora.ox.ac.uk/objects/uuid:130b1f6e-0ec0-4429-aed1-262d9f67a595
https://ora.ox.ac.uk/objects/uuid:130b1f6e-0ec0-4429-aed1-262d9f67a595
Autor:
Susan H. Brawley, Kurt LaButti, Konstantinos Mavromatis, Arthur R. Grossman, Jay W. Kim, Jerry Jenkins, John W. Stiller, Matthew Zane, Jeremy Schmutz, Matt Nolan, Jane Grimwood, Simon Prochnik, Mansi Chovatia
Publikováno v:
PloS one, vol 11, iss 3
PLoS ONE
PLoS ONE, Vol 11, Iss 3, p e0151883 (2016)
PLoS ONE
PLoS ONE, Vol 11, Iss 3, p e0151883 (2016)
Porphyra is a macrophytic red alga of the Bangiales that is important ecologically and economically. We describe the genomes of three bacteria in the phylum Planctomycetes (designated P1, P2 and P3) that were isolated from blades of Porphyra umbilica
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bb28a8e46ba47ee048e5e84556b362cf
https://escholarship.org/uc/item/42z3z6fb
https://escholarship.org/uc/item/42z3z6fb
Autor:
Mark Yandell, Ehab Abouheif, Fabian Zimmer, Christine G. Elsik, Darren E. Hagen, Elizabeth Cash, Sarah E. Marsh, Joseph A. Moeller, Lothar Wissler, Sandra W. Clifton, Martin Helmkampf, Shu Tao, Dan Graur, Amy Cavanaugh, Justin T. Reese, Lumi Viljakainen, Nicole M. Gerardo, Brian R. Johnson, Chris Smith, Marguerite C. Murphy, Joshua D. Gibson, Olgert Denas, Marie-Julie Favé, George M. Weinstock, R. James Taylor, Christopher D. Smith, Monica Munoz-Torres, Pascal Bouffard, Meredith C. Naughton, Steven C. Slater, Jürgen Gadau, Lewyn Li, Jay W. Kim, Timothy T. Harkins, Erich Bornberg-Bauer, Rick P. Overson, Kirk J. Grubbs, Wesley C. Warren, Neil D. Tsutsui, Cameron R. Currie, Rajendhran Rajakumar, Garret Suen, Clotilde Teiling, Eric J. Caldera, Hao Hu, Surabhi Nigam, Eran Elhaik, Carson Holt, Jarrod J. Scott
Publikováno v:
PLoS genetics, vol 7, iss 2
PLoS Genetics, vol 7, iss 2
PLoS Genetics, Vol 7, Iss 2, p e1002007 (2011)
PLoS Genetics
PLoS Genetics, vol 7, iss 2
PLoS Genetics, Vol 7, Iss 2, p e1002007 (2011)
PLoS Genetics
Leaf-cutter ants are one of the most important herbivorous insects in the Neotropics, harvesting vast quantities of fresh leaf material. The ants use leaves to cultivate a fungus that serves as the colony's primary food source. This obligate ant-fung
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2fb7b683d0ff6c073bc637be624b993a
https://escholarship.org/uc/item/8xh6k5dd
https://escholarship.org/uc/item/8xh6k5dd
Autor:
Monica Munoz-Torres, Vincent Croset, Reed M. Johnson, Jürgen Gadau, Richard Benton, Abderrahman Khila, Surabhi Nigam, Martin Helmkampf, Marguerite C. Murphy, Rin Nakamura, Vilaiwan M. Fernandes, Darren E. Hagen, Shu Tao, Dan Graur, Florian Wolschin, Kirk J. Grubbs, Lumi Viljakainen, Neil D. Tsutsui, Cameron R. Currie, Chris Smith, Jay W. Kim, Christopher D. Smith, Mark Yandell, Ehab Abouheif, Hugh M. Robertson, Christine G. Elsik, Brian R. Johnson, Julie A. Mustard, Oliver Niehuis, Justin T. Reese, Carson Holt, Joshua D. Gibson, Elizabeth Cash, Kaitlyn A. Mathis, Marie-Julie Favé, Rick P. Overson, Rajendhran Rajakumar, Garret Suen, Wulfila Gronenberg, Aleksey V. Zimin, Candice W. Torres, Ana Sofia Ibarraran Viniegra, Eran Elhaik, Hao Hu, Jennifer E. Placek
We report the draft genome sequence of the red harvester ant, Pogonomyrmex barbatus . The genome was sequenced using 454 pyrosequencing, and the current assembly and annotation were completed in less than 1 y. Analyses of conserved gene groups (more
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5f3386b3ffda0f37b8c9a55730462f6b
https://europepmc.org/articles/PMC3078412/
https://europepmc.org/articles/PMC3078412/
Autor:
Rahul Singh, Jay W. Kim
Publikováno v:
Bioinformatics Research and Applications ISBN: 9783642130779
ISBRA
ISBRA
The study of non-sequential alignments, with different connectivity of the aligned fragments in the proteins being compared can offer a more complete picture of the structural, evolutionary and functional relationship between two proteins, than what
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c1dcf2c20f833054a1a021e0d7cfc62b
https://doi.org/10.1007/978-3-642-13078-6_10
https://doi.org/10.1007/978-3-642-13078-6_10