Zobrazeno 1 - 10
of 24
pro vyhledávání: '"Jason S Cumbie"'
Autor:
Tatiana S Mucyn, Scott Yourstone, Abigail L Lind, Surojit Biswas, Marc T Nishimura, David A Baltrus, Jason S Cumbie, Jeff H Chang, Corbin D Jones, Jeffery L Dangl, Sarah R Grant
Publikováno v:
PLoS Pathogens, Vol 10, Iss 1, p e1003807 (2014)
Pseudomonas syringae is a phylogenetically diverse species of Gram-negative bacterial plant pathogens responsible for crop diseases around the world. The HrpL sigma factor drives expression of the major P. syringae virulence regulon. HrpL controls ex
Externí odkaz:
https://doaj.org/article/a5150c4dfe6347a5bb87d696b4750c9a
Autor:
Kathryn E Bushley, Rajani Raja, Pankaj Jaiswal, Jason S Cumbie, Mariko Nonogaki, Alexander E Boyd, C Alisha Owensby, Brian J Knaus, Justin Elser, Daniel Miller, Yanming Di, Kerry L McPhail, Joseph W Spatafora
Publikováno v:
PLoS Genetics, Vol 9, Iss 6, p e1003496 (2013)
The ascomycete fungus Tolypocladium inflatum, a pathogen of beetle larvae, is best known as the producer of the immunosuppressant drug cyclosporin. The draft genome of T. inflatum strain NRRL 8044 (ATCC 34921), the isolate from which cyclosporin was
Externí odkaz:
https://doaj.org/article/a94b74d376b6406fbb2d42359ec784d6
Publikováno v:
PLoS ONE, Vol 7, Iss 10, p e46128 (2012)
When assessing differential gene expression from RNA sequencing data, commonly used statistical tests tend to have greater power to detect differential expression of genes encoding longer transcripts. This phenomenon, called "length bias", will influ
Externí odkaz:
https://doaj.org/article/9f050ebf6db840378c71643158aa9bbd
Autor:
Jason S Cumbie, Jeffrey A Kimbrel, Yanming Di, Daniel W Schafer, Larry J Wilhelm, Samuel E Fox, Christopher M Sullivan, Aron D Curzon, James C Carrington, Todd C Mockler, Jeff H Chang
Publikováno v:
PLoS ONE, Vol 6, Iss 10, p e25279 (2011)
GENE-counter is a complete Perl-based computational pipeline for analyzing RNA-Sequencing (RNA-Seq) data for differential gene expression. In addition to its use in studying transcriptomes of eukaryotic model organisms, GENE-counter is applicable for
Externí odkaz:
https://doaj.org/article/918cec6e8d7f40b286224d18ba6e665c
Autor:
Kristin D Kasschau, Noah Fahlgren, Elisabeth J Chapman, Christopher M Sullivan, Jason S Cumbie, Scott A Givan, James C Carrington
Publikováno v:
PLoS Biology, Vol 5, Iss 3, p e57 (2007)
Eukaryotes contain a diversified set of small RNA-guided pathways that control genes, repeated sequences, and viruses at the transcriptional and posttranscriptional levels. Genome-wide profiles and analyses of small RNAs, particularly the large class
Externí odkaz:
https://doaj.org/article/3fa6d55c9c294f5e9cbaabdab930f754
Autor:
Noah Fahlgren, Miya D Howell, Kristin D Kasschau, Elisabeth J Chapman, Christopher M Sullivan, Jason S Cumbie, Scott A Givan, Theresa F Law, Sarah R Grant, Jeffery L Dangl, James C Carrington
Publikováno v:
PLoS ONE, Vol 2, Iss 2, p e219 (2007)
In plants, microRNAs (miRNAs) comprise one of two classes of small RNAs that function primarily as negative regulators at the posttranscriptional level. Several MIRNA genes in the plant kingdom are ancient, with conservation extending between angiosp
Externí odkaz:
https://doaj.org/article/c3a9ab9b700e487fb6572d4d1d0b852e
Autor:
Jason S. Cumbie, Alex Buchanan, Alyssa Burkhardt, Jeff H. Chang, Brad Day, Elizabeth A. Savory
Publikováno v:
Molecular Plant-Microbe Interactions®. 28:298-309
Pseudoperonospora cubensis is an obligate pathogen and causative agent of cucurbit downy mildew. To help advance our understanding of the pathogenicity of P. cubensis, we used RNA-Seq to improve the quality of its reference genome sequence. We also c
Publikováno v:
Genome-Enabled Analysis of Plant-Pathogen Interactions
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::63ee43f3d66d8b1cc953b93126367003
https://doi.org/10.1094/9780890544983.025
https://doi.org/10.1094/9780890544983.025
Small Genetic Circuits and MicroRNAs: Big Players in Polymerase II Transcriptional Control in Plants
RNA Polymerase II (Pol II) regulatory cascades involving transcription factors (TFs) and their targets orchestrate the genetic circuitry of every eukaryotic organism. In order to understand how these cascades function, they can be dissected into smal
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8e2477e303a9cc665db07d076ff87b36
https://europepmc.org/articles/PMC4790873/
https://europepmc.org/articles/PMC4790873/
Publikováno v:
Genes
Genes, Vol 2, Iss 4, Pp 689-705 (2011)
Genes, Vol 2, Iss 4, Pp 689-705 (2011)
The throughput and single-base resolution of RNA-Sequencing (RNA-Seq) have contributed to a dramatic change in transcriptomic-based inquiries and resulted in many new insights into the complexities of bacterial transcriptomes. RNA-Seq could contribut