Zobrazeno 1 - 10
of 21
pro vyhledávání: '"Jason M Inman"'
Autor:
Natalie D Fedorova, Nora Khaldi, Vinita S Joardar, Rama Maiti, Paolo Amedeo, Michael J Anderson, Jonathan Crabtree, Joana C Silva, Jonathan H Badger, Ahmed Albarraq, Sam Angiuoli, Howard Bussey, Paul Bowyer, Peter J Cotty, Paul S Dyer, Amy Egan, Kevin Galens, Claire M Fraser-Liggett, Brian J Haas, Jason M Inman, Richard Kent, Sebastien Lemieux, Iran Malavazi, Joshua Orvis, Terry Roemer, Catherine M Ronning, Jaideep P Sundaram, Granger Sutton, Geoff Turner, J Craig Venter, Owen R White, Brett R Whitty, Phil Youngman, Kenneth H Wolfe, Gustavo H Goldman, Jennifer R Wortman, Bo Jiang, David W Denning, William C Nierman
Publikováno v:
PLoS Genetics, Vol 4, Iss 4, p e1000046 (2008)
We present the genome sequences of a new clinical isolate of the important human pathogen, Aspergillus fumigatus, A1163, and two closely related but rarely pathogenic species, Neosartorya fischeri NRRL181 and Aspergillus clavatus NRRL1. Comparative g
Externí odkaz:
https://doaj.org/article/faa9cdea440a44ac8cfb2dcbcab87503
Autor:
Josh L. Espinoza, Derek M. Harkins, Manolito Torralba, Andres Gomez, Sarah K. Highlander, Marcus B. Jones, Pamela Leong, Richard Saffery, Michelle Bockmann, Claire Kuelbs, Jason M. Inman, Toby Hughes, Jeffrey M. Craig, Karen E. Nelson, Chris L. Dupont
Publikováno v:
mBio, Vol 9, Iss 6 (2018)
ABSTRACT To address the question of how microbial diversity and function in the oral cavities of children relates to caries diagnosis, we surveyed the supragingival plaque biofilm microbiome in 44 juvenile twin pairs. Using shotgun sequencing, we con
Externí odkaz:
https://doaj.org/article/d0f9ec9e3f6946dfaa0c58af1210e690
Publikováno v:
BMC Bioinformatics, Vol 19, Iss 1, Pp 1-6 (2018)
BMC Bioinformatics
BMC Bioinformatics
Background Bacterial pan-genomes, comprised of conserved and variable genes across multiple sequenced bacterial genomes, allow for identification of genomic regions that are phylogenetically discriminating or functionally important. Pan-genomes consi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::32fd94118b784f8e6b21516f09b62f87
http://link.springer.com/article/10.1186/s12859-018-2250-y
http://link.springer.com/article/10.1186/s12859-018-2250-y
Autor:
Jeffrey M. Craig, Karen E. Nelson, Andres Gomez, Richard Saffery, Rohith Kodukula, Josh L. Espinoza, Pamela Leong, Jason M. Inman, Christopher L. Dupont, Manolito Torralba, Sarah K. Highlander, Michelle Bockmann, Claire Kuelbs, Marcus B. Jones, Toby Hughes, Derek M. Harkins
Publikováno v:
Cell hostmicrobe. 22(3)
Host-associated microbial communities are influenced by both host genetics and environmental factors. However, factors controlling the human oral microbiome and their impact on disease remain to be investigated. To determine the combined and relative
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e62aee62d2e636db6ed206d6a132e60f
https://pubmed.ncbi.nlm.nih.gov/28910628
https://pubmed.ncbi.nlm.nih.gov/28910628
Autor:
Jason M. Inman, Derrick E. Fouts, Lauren M. Brinkac, Thomas H. Clarke, Erin Beck, Granger G. Sutton
Publikováno v:
Bioinformatics
Summary The JCVI pan-genome pipeline is a collection of programs to run PanOCT and tools that support and extend the capabilities of PanOCT. PanOCT (pan-genome ortholog clustering tool) is a tool for pan-genome analysis of closely related prokaryotic
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c0ec888aeacd535b426a5f0af4455acb
http://europepmc.org/articles/PMC6419995
http://europepmc.org/articles/PMC6419995
Autor:
Granger G. Sutton, Pratap Venepally, Jason M. Inman, Erin Beck, Lauren M. Brinkac, Derrick E. Fouts
Publikováno v:
Bioinformatics (Oxford, England). 33(11)
Summary LOCUST is a custom sequence locus typer tool for classifying microbial genomes. It provides a fully automated opportunity to customize the classification of genome-wide nucleotide variant data most relevant to biological research. Availabilit
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7f8003512eaba0d309fd7ec9c805938b
https://pubmed.ncbi.nlm.nih.gov/28130240
https://pubmed.ncbi.nlm.nih.gov/28130240
Autor:
Hernan Lorenzi, Jeff Hoover, Leonid Kagan, Jason M. Inman, Todd Safford, Shannon J. Williamson, Sean D. Murphy
Publikováno v:
Standards in Genomic Sciences
In the past few years, the field of metagenomics has been growing at an accelerated pace, particularly in response to advancements in new sequencing technologies. The large volume of sequence data from novel organisms generated by metagenomic project
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2eec95b239a234877d368274539e6690
http://europepmc.org/articles/PMC3156399
http://europepmc.org/articles/PMC3156399
Autor:
Joshua Orvis, Erin Beck, Anuradha Ganapathy, Hernan Lorenzi, Nikhat Zafar, Mathangi Thiagarajan, Kevin Galens, Adam Resnick, Yongmei Zhao, Yinong Sebastian, A. Scott Durkin, Tanja Davidsen, Elisabet Caler, Kevin Galinsky, Robert Montgomery, Derek M. Harkins, Owen White, Robert J. Dodson, Ramana Madupu, Jaideep P. Sundaram, Granger G. Sutton, Seth Schobel, Susmita Shrivastava, Lauren M. Brinkac, Jason M. Inman, Jonathan Crabtree, David M. Tanenbaum
Publikováno v:
Nucleic Acids Research
Pathema (http://pathema.jcvi.org) is one of the eight Bioinformatics Resource Centers (BRCs) funded by the National Institute of Allergy and Infectious Disease (NIAID) designed to serve as a core resource for the bio-defense and infectious disease re
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0e48bd9e9a144f83dacb954ef10e9644
https://doi.org/10.1093/nar/gkp850
https://doi.org/10.1093/nar/gkp850
Autor:
O. A. Kozhich, Charlie C. Xiang, Michael J. Brownstein, Yi Chen, Quang N. Phan, Jason M. Inman, Mei Chen
Publikováno v:
BioTechniques. 34:386-393
Recently, we described a technique that allows us to prepare probes for expression profiling from 0.5–1 μg RNA without template or signal amplification. However, we were unable to use this method to study cells harvested by needle biopsy, cell sor
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::1e12a7ca21b814e0ef46373445df8f40
https://doi.org/10.2144/03342mt03
https://doi.org/10.2144/03342mt03
Autor:
Arne Hansen, Eva Mezey, Michael J. Brownstein, Yi Chen, Miklos Palkovits, Pamela Gehron Robey, Charlie C. Xiang, Natasha Cherman, Sergei A. Kuznetsov, Jason M. Inman, Zhi Qing Qi, Quang N. Phan
Publikováno v:
Nature Methods. 4:35-37
G protein-coupled receptors (GPCRs) mediate effects of extracellular signaling molecules in all the body's cells. These receptors are encoded by scarce mRNAs; therefore, detecting their transcripts with conventional microarrays is difficult. We prese
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e1f30943a25cd45f03d0fac7f33f065b
https://doi.org/10.1038/nmeth977
https://doi.org/10.1038/nmeth977