Zobrazeno 1 - 9
of 9
pro vyhledávání: '"Jason K Baumohl"'
Autor:
Jeffrey M Skerker, Dacia Leon, Morgan N Price, Jordan S Mar, Daniel R Tarjan, Kelly M Wetmore, Adam M Deutschbauer, Jason K Baumohl, Stefan Bauer, Ana B Ibáñez, Valerie D Mitchell, Cindy H Wu, Ping Hu, Terry Hazen, Adam P Arkin
Publikováno v:
Molecular Systems Biology, Vol 9, Iss 1, Pp 1-21 (2013)
Abstract The efficient production of biofuels from cellulosic feedstocks will require the efficient fermentation of the sugars in hydrolyzed plant material. Unfortunately, plant hydrolysates also contain many compounds that inhibit microbial growth a
Externí odkaz:
https://doaj.org/article/5b27a545429d4b08976dc36c2769d249
Autor:
Adam Deutschbauer, Morgan N Price, Kelly M Wetmore, Wenjun Shao, Jason K Baumohl, Zhuchen Xu, Michelle Nguyen, Raquel Tamse, Ronald W Davis, Adam P Arkin
Publikováno v:
PLoS Genetics, Vol 7, Iss 11, p e1002385 (2011)
Most genes in bacteria are experimentally uncharacterized and cannot be annotated with a specific function. Given the great diversity of bacteria and the ease of genome sequencing, high-throughput approaches to identify gene function experimentally a
Externí odkaz:
https://doaj.org/article/da779818e07d41399f576de5c61ab091
Autor:
Shinjae Yoo, Matthew L. Henderson, Sarah S. Poon, Pavel S. Novichkov, Mark Mills, Roy T. Kamimura, Adam P. Arkin, Rick Stevens, Holly L. Haun, Shinnosuke Kondo, Meghan M Drake, Aaron A. Best, José P. Faria, Fernando Perez, Matthew DeJongh, Gang Fang, Thomas Brettin, Sergei Maslov, Janaka N. Edirisinghe, Folker Meyer, Jer Ming Chia, Scott Devoid, Doreen Ware, Steven E. Brenner, Paul M. Frybarger, Miriam Land, Dan Gunter, Fei He, John-Marc Chandonia, Hyunseung Yoo, Marcin P. Joachimiak, Dantong Yu, Christopher S. Henry, Mark Gerstein, Christopher Bun, Michael W. Sneddon, Samuel M. D. Seaver, Rashmi Jain, Stephen Y. Chan, Robert W. Cottingham, James J. Davis, Annette Greiner, Inna Dubchak, Vivek Kumar, Priya Ranjan, Daifeng Wang, Neal Conrad, James Thomason, Fangfang Xia, Maulik Shukla, Gavin Price, Nathan L. Tintle, Gary J. Olsen, Shiran Pasternak, Shane Canon, Roman A. Sutormin, William J. Riehl, Nomi L. Harris, Dan Murphy-Olson, Jason K. Baumohl, Wolfgang Gerlach, Benjamin H. Allen, Pamela C. Ronald, Michael C. Schatz, Mustafa H Syed, Brian H. Davison, Taeyun Oh, Dylan Chivian, Elizabeth M. Glass, R. L. Colasanti, Erik Pearson, David J. Weston, Sunita Kumari, Kevin P. Keegan, Emily M. Dietrich, Robert Olson, Srividya Ramakrishnan, James Gurtowski, Benjamin P. Bowen, Paramvir S. Dehal, Bruce Parrello
Publikováno v:
Nature biotechnology, vol 36, iss 7
Nature Biotechnology
Arkin, AP; Cottingham, RW; Henry, CS; Harris, NL; Stevens, RL; Maslov, S; et al.(2018). KBase: The United States department of energy systems biology knowledgebase. Nature Biotechnology, 36(7), 566-569. doi: 10.1038/nbt.4163. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/7p39r37f
Nature Biotechnology
Arkin, AP; Cottingham, RW; Henry, CS; Harris, NL; Stevens, RL; Maslov, S; et al.(2018). KBase: The United States department of energy systems biology knowledgebase. Nature Biotechnology, 36(7), 566-569. doi: 10.1038/nbt.4163. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/7p39r37f
Author(s): Arkin, Adam P; Cottingham, Robert W; Henry, Christopher S; Harris, Nomi L; Stevens, Rick L; Maslov, Sergei; Dehal, Paramvir; Ware, Doreen; Perez, Fernando; Canon, Shane; Sneddon, Michael W; Henderson, Matthew L; Riehl, William J; Murphy-Ol
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c789b3716f923398ce5518911fb65ab7
https://doi.org/10.1038/nbt.4163
https://doi.org/10.1038/nbt.4163
Autor:
Terry C. Hazen, Jason K. Baumohl, Jizhong Zhou, Aifen Zhou, Judy D. Wall, Aindrila Mukhopadhyay, Marcin P. Joachimiak, Zhili He, Ming Xie, Peter I. Benke, David A. Stahl, Rong Song, Jay D. Keasling, Adam P. Arkin, Edward E. K. Baidoo
Publikováno v:
The ISME Journal. 7:1790-1802
Desulfovibrio vulgaris Hildenborough strains with significantly increased tolerance to NaCl were obtained via experimental evolution. A NaCl-evolved strain, ES9-11, isolated from a population cultured for 1200 generations in medium amended with 100 m
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::49bc642c00d423f51e99de378e622dae
https://doi.org/10.1038/ismej.2013.60
https://doi.org/10.1038/ismej.2013.60
Autor:
Seaver Smd, Erik Pearson, José P. Faria, Gary J. Olsen, Olson B, Sarah S. Poon, Jason K. Baumohl, Christopher Bun, Emily M. Dietrich, Pamela C. Ronald, Nathan L. Tintle, Fei He, Paramvir S. Dehal, Marcin P. Joachimiak, Benjamin H. Allen, Thomas Brettin, Benjamin P. Bowen, Folker Meyer, Steven E. Brenner, Holly L. Haun, Shinjae Yoo, Fernando Perez, Matthew DeJongh, R. L. Colasanti, Maulik Shukla, Wolfgang Gerlach, Kevin P. Keegan, Jer Ming Chia, Michael C. Schatz, Taeyun Oh, Dylan Chivian, James Thomason, Sergei Maslov, Roman A. Sutormin, John-Marc Chandonia, Nomi L. Harris, Dan Murphy-Olson, James J. Davis, Hyunseung Yoo, Matthew L. Henderson, Roy T. Kamimura, Shane Canon, Michael W. Sneddon, Christopher S. Henry, Stephen Y. Chan, Pavel S. Novichkov, Inna Dubchak, Mark Mills, Adam P. Arkin, Neal Conrad, Fangfang Xia, Gang Fang, Scott Devoid, Janaka N. Edirisinghe, Brian H. Davison, Bruce Parrello, Shinnosuke Kondo, William J. Riehl, Paul M. Frybarger, Doreen Ware, Miriam Land, Dan Gunter, Rashmi Jain, Rick Stevens, Meghan M Drake, Gavin Price, Shiran Pasternak, Mustafa H Syed, Mark Gerstein, David J. Weston, Sunita Kumari, Kumar, Robert W. Cottingham, Elizabeth M. Glass, James Gurtowski, Aaron A. Best, Daifeng Wang, Srividya Ramakrishnan, Priya Ranjan
The U.S. Department of Energy Systems Biology Knowledgebase (KBase) is an open-source software and data platform designed to meet the grand challenge of systems biology — predicting and designing biological function from the biomolecular (small sca
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a42f71091420946234b6e35b826e316f
https://escholarship.org/uc/item/4058b7v5
https://escholarship.org/uc/item/4058b7v5
Autor:
Dylan Chivian, Katherine H. Huang, John T. Bates, Paramvir S. Dehal, Marcin P. Joachimiak, Greg D. Friedland, Keith Keller, Inna Dubchak, Jason K. Baumohl, Eric J. Alm, Pavel S. Novichkov, Adam P. Arkin, Morgan N. Price
Publikováno v:
Nucleic Acids Research
OUP
OUP
Since 2003, MicrobesOnline (http://www.microbesonline.org) has been providing a community resource for comparative and functional genome analysis. The portal includes over 1000 complete genomes of bacteria, archaea and fungi and thousands of expressi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::27f6856f12bd78511126a4df24249d6c
http://europepmc.org/articles/PMC2808868
http://europepmc.org/articles/PMC2808868
Autor:
Cindy H. Wu, Adam M. Deutschbauer, Adam P. Arkin, Jeffrey M. Skerker, Kelly M. Wetmore, Jordan Mar, Ping Hu, Jason K. Baumohl, Stefan Bauer, Terry C. Hazen, Daniel R. Tarjan, Morgan N. Price, Valerie D. Mitchell, Ana B. Ibáñez, Dacia Leon
Publikováno v:
Molecular Systems Biology
Complex chemical stress arises during the production of biofuels. Large-scale mutant fitness profiling was used to identify bacterial and yeast tolerance genes and to model fitness in a complex hydrolysate mixture. The resulting model can be used to
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cef213b0e07615b7da2106c535eb1d89
https://doi.org/10.1038/msb.2013.30
https://doi.org/10.1038/msb.2013.30
Autor:
Qiang He, Marcin P. Joachimiak, Judy D. Wall, Jizhong Zhou, Christopher L. Hemme, Terry C. Hazen, Jason K. Baumohl, Matthew W. Fields, Zhili He, Yunyu I. Chen, Grant M. Zane, Adam P. Arkin, Aifen Zhou
Publikováno v:
Applied and environmental microbiology. 78(4)
Crp/Fnr-type global transcriptional regulators regulate various metabolic pathways in bacteria and typically function in response to environmental changes. However, little is known about the function of four annotated Crp/Fnr homologs (DVU0379, DVU20
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::56a352e00b554b4e0f3dadb3b545c9ae
https://pubmed.ncbi.nlm.nih.gov/22156435
https://pubmed.ncbi.nlm.nih.gov/22156435
Autor:
Wenjun Shao, Morgan N. Price, Jason K. Baumohl, Ronald W. Davis, Adam P. Arkin, Kelly M. Wetmore, Zhuchen Xu, Adam M. Deutschbauer, Michelle Nguyen, Raquel Tamse
Publikováno v:
PLoS genetics, vol 7, iss 11
PLoS Genetics, Vol 7, Iss 11, p e1002385 (2011)
PLoS Genetics
PLoS Genetics, Vol 7, Iss 11, p e1002385 (2011)
PLoS Genetics
Most genes in bacteria are experimentally uncharacterized and cannot be annotated with a specific function. Given the great diversity of bacteria and the ease of genome sequencing, high-throughput approaches to identify gene function experimentally a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::34e39f44eef87de6fdd8aa109affa519
https://escholarship.org/uc/item/7bz893c0
https://escholarship.org/uc/item/7bz893c0