Zobrazeno 1 - 10
of 269
pro vyhledávání: '"Jason E. Mcdermott"'
Autor:
Praveen-Kumar Raj-Kumar, Xiaoying Lin, Tao Liu, Lori A. Sturtz, Marina A. Gritsenko, Vladislav A. Petyuk, Tyler J. Sagendorf, Brenda Deyarmin, Jianfang Liu, Anupama Praveen-Kumar, Guisong Wang, Jason E. McDermott, Anil K. Shukla, Ronald J. Moore, Matthew E. Monroe, Bobbie-Jo M. Webb-Robertson, Jeffrey A. Hooke, Leigh Fantacone-Campbell, Brad Mostoller, Leonid Kvecher, Jennifer Kane, Jennifer Melley, Stella Somiari, Patrick Soon-Shiong, Richard D. Smith, Richard J. Mural, Karin D. Rodland, Craig D. Shriver, Albert J. Kovatich, Hai Hu
Publikováno v:
Breast Cancer Research, Vol 26, Iss 1, Pp 1-24 (2024)
Abstract Background Breast cancer (BC) is the most commonly diagnosed cancer and the leading cause of cancer death among women globally. Despite advances, there is considerable variation in clinical outcomes for patients with non-luminal A tumors, cl
Externí odkaz:
https://doaj.org/article/60e2f6b00711485594ffbd5654bfcc15
Autor:
David Geller-McGrath, Kishori M Konwar, Virginia P Edgcomb, Maria Pachiadaki, Jack W Roddy, Travis J Wheeler, Jason E McDermott
Publikováno v:
eLife, Vol 13 (2024)
The reconstruction of complete microbial metabolic pathways using ‘omics data from environmental samples remains challenging. Computational pipelines for pathway reconstruction that utilize machine learning methods to predict the presence or absenc
Externí odkaz:
https://doaj.org/article/387f1b839f4e4c178ed7843a25e9c26d
Autor:
Ruonan Wu, Michelle R. Davison, William C. Nelson, Montana L. Smith, Mary S. Lipton, Janet K. Jansson, Ryan S. McClure, Jason E. McDermott, Kirsten S. Hofmockel
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-12 (2023)
Abstract Bacteriophages are abundant in soils. However, the majority are uncharacterized, and their hosts are unknown. Here, we apply high-throughput chromosome conformation capture (Hi–C) to directly capture phage-host relationships. Some hosts ha
Externí odkaz:
https://doaj.org/article/4f68eead6b6e40d5a31c3db43382e34e
Autor:
Sneha P. Couvillion, Robert E. Danczak, Dan Naylor, Montana L. Smith, Kelly G. Stratton, Vanessa L. Paurus, Kent J. Bloodsworth, Yuliya Farris, Darren J. Schmidt, Rachel E. Richardson, Lisa M. Bramer, Sarah J. Fansler, Ernesto S. Nakayasu, Jason E. McDermott, Thomas O. Metz, Mary S. Lipton, Janet K. Jansson, Kirsten S. Hofmockel
Publikováno v:
Microbiome, Vol 11, Iss 1, Pp 1-20 (2023)
Abstract Background Microbiomes contribute to multiple ecosystem services by transforming organic matter in the soil. Extreme shifts in the environment, such as drying-rewetting cycles during drought, can impact the microbial metabolism of organic ma
Externí odkaz:
https://doaj.org/article/911829cd983242c7847f34849a073ec4
Autor:
Ruonan Wu, Clyde A. Smith, Garry W. Buchko, Ian K. Blaby, David Paez-Espino, Nikos C. Kyrpides, Yasuo Yoshikuni, Jason E. McDermott, Kirsten S. Hofmockel, John R. Cort, Janet K. Jansson
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-14 (2022)
Metagenomics is revealing auxiliary metabolic genes (AMGs) in soil viral genomes. Here, authors solve the crystal structure for a soil viral AMG product, free and ligand bound, and show the protein can decompose chitin, a common carbon polymer.
Externí odkaz:
https://doaj.org/article/8096e82d3dc740d8a095035cfffc6df7
Autor:
Ruonan Wu, Michelle R. Davison, Yuqian Gao, Carrie D. Nicora, Jason E. Mcdermott, Kristin E. Burnum-Johnson, Kirsten S. Hofmockel, Janet K. Jansson
Publikováno v:
Communications Biology, Vol 4, Iss 1, Pp 1-11 (2021)
Wu et al. use a multi-omics approach (metagenomics, metatranscriptomics, and metaproteomics) to characterize soil viral responses to soil moisture. The results indicate that extreme shifts in soil moisture have dramatic impacts on the composition, ac
Externí odkaz:
https://doaj.org/article/6bb622d58e0b4de8a0750f5635d92a7b
Autor:
Song Feng, Emily Heath, Brett Jefferson, Cliff Joslyn, Henry Kvinge, Hugh D. Mitchell, Brenda Praggastis, Amie J. Eisfeld, Amy C. Sims, Larissa B. Thackray, Shufang Fan, Kevin B. Walters, Peter J. Halfmann, Danielle Westhoff-Smith, Qing Tan, Vineet D. Menachery, Timothy P. Sheahan, Adam S. Cockrell, Jacob F. Kocher, Kelly G. Stratton, Natalie C. Heller, Lisa M. Bramer, Michael S. Diamond, Ralph S. Baric, Katrina M. Waters, Yoshihiro Kawaoka, Jason E. McDermott, Emilie Purvine
Publikováno v:
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-21 (2021)
Abstract Background Representing biological networks as graphs is a powerful approach to reveal underlying patterns, signatures, and critical components from high-throughput biomolecular data. However, graphs do not natively capture the multi-way rel
Externí odkaz:
https://doaj.org/article/3730664a2b894f34b1b4e404f44398c0
Autor:
Ruonan Wu, Michelle R. Davison, William C. Nelson, Emily B. Graham, Sarah J. Fansler, Yuliya Farris, Sheryl L. Bell, Iobani Godinez, Jason E. Mcdermott, Kirsten S. Hofmockel, Janet K. Jansson
Publikováno v:
mBio, Vol 12, Iss 6 (2021)
ABSTRACT Soil viruses are abundant, but the influence of the environment and climate on soil viruses remains poorly understood. Here, we addressed this gap by comparing the diversity, abundance, lifestyle, and metabolic potential of DNA viruses in th
Externí odkaz:
https://doaj.org/article/695cf808539648b5951035bbe5a1dff2
Autor:
Amber D. Gabbert, Jennifer L. Mydosh, Prabhat K. Talukdar, Lisa M. Gloss, Jason E. McDermott, Kerry K. Cooper, Geremy C. Clair, Michael E. Konkel
Publikováno v:
Biomolecules, Vol 13, Iss 1, p 135 (2023)
Campylobacter jejuni is likely the most common bacterial cause of gastroenteritis worldwide, responsible for millions of cases of inflammatory diarrhea characterized by severe abdominal cramps and blood in the stool. Further, C. jejuni infections are
Externí odkaz:
https://doaj.org/article/331d045029e74132accf4f3501da3add
Autor:
Uchenna Emechebe, David Giraud, Azzdine Y. Ammi, Kristin L. Scott, Jon M. Jacobs, Jason E. McDermott, Igor V. Dykan, Nabil J. Alkayed, Anthony P. Barnes, Sanjiv Kaul, Catherine M. Davis
Publikováno v:
Data in Brief, Vol 38, Iss , Pp 107343- (2021)
Cardiac endothelial cells respond to both ischemia and therapeutic ultrasound; the proteomic changes underlying these responses are unknown. This data article provides raw and processed data resulting from our global, unbiased phosphoproteomics inves
Externí odkaz:
https://doaj.org/article/aaabecb6cd7a4e34ae3da08f3f6abeea