Zobrazeno 1 - 10
of 108
pro vyhledávání: '"Jason D Buenrostro"'
Autor:
Giulia Schiroli, Vinay Kartha, Fabiana M. Duarte, Trine A. Kristiansen, Christina Mayerhofer, Rojesh Shrestha, Andrew Earl, Yan Hu, Tristan Tay, Catherine Rhee, Jason D. Buenrostro, David T. Scadden
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-20 (2024)
Abstract Hematopoietic stem cell (HSC) mutations can result in clonal hematopoiesis (CH) with heterogeneous clinical outcomes. Here, we investigate how the cell state preceding Tet2 mutation impacts the pre-malignant phenotype. Using an inducible sys
Externí odkaz:
https://doaj.org/article/b70a34db47874230850c2107fec82dd9
Autor:
Georges Natsoulis, John M Bell, Hua Xu, Jason D Buenrostro, Heather Ordonez, Susan Grimes, Daniel Newburger, Michael Jensen, Jacob M Zahn, Nancy Zhang, Hanlee P Ji
Publikováno v:
PLoS ONE, Vol 6, Iss 6, p e21088 (2011)
We have developed an integrated strategy for targeted resequencing and analysis of gene subsets from the human exome for variants. Our capture technology is geared towards resequencing gene subsets substantially larger than can be done efficiently wi
Externí odkaz:
https://doaj.org/article/e85a5483fa764adc85f7122b49dc7a44
Autor:
Isabella Del Priore, Sai Ma, Jonathan Strecker, Tyler Jacks, Lindsay M. LaFave, Jason D. Buenrostro
Publikováno v:
STAR Protocols, Vol 2, Iss 2, Pp 100583- (2021)
Summary: Single-cell ATAC sequencing using combinatorial indexing (sciATAC-seq) enables the identification of chromatin accessibility profiles at single-cell resolution with a dual-barcoding approach during transposition and library construction. Unl
Externí odkaz:
https://doaj.org/article/a5d77e8692f1447982da45153e7cc119
Autor:
Sarah M. Mangiameli, Haiqi Chen, Andrew S. Earl, Julie A. Dobkin, Daniel Lesman, Jason D. Buenrostro, Fei Chen
Publikováno v:
Nature Methods. 20:686-694
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::4f2dd7fe8fd83cd0f58c4fc84f78f722
https://doi.org/10.1038/s41592-023-01845-8
https://doi.org/10.1038/s41592-023-01845-8
Autor:
Tyler Jacks, Jason D. Buenrostro, Aviv Regev, Carla F. Kim, Charles M. Rudin, Natasha Rekhtman, Gregory J. Riely, Roderick T. Bronson, Manav Gupta, Kevin Meli, Francisco J. Sánchez-Rivera, Peter M.K. Westcott, Vinay K. Kartha, Manon Miller, Adam J. Schoenfeld, Isabella Del Priore, Jonathan Y. Kim, Lydia P. DeAngelo, Manyuan Liu, Arjun Bhutkar, Lindsay M. LaFave, Sai Ma, Carla P. Concepcion
Supplementary Figures related to Figures 1-6
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4fc3d2abf491d2aed509bace98e32b78
https://doi.org/10.1158/2159-8290.22541081.v1
https://doi.org/10.1158/2159-8290.22541081.v1
Autor:
Tyler Jacks, Jason D. Buenrostro, Aviv Regev, Carla F. Kim, Charles M. Rudin, Natasha Rekhtman, Gregory J. Riely, Roderick T. Bronson, Manav Gupta, Kevin Meli, Francisco J. Sánchez-Rivera, Peter M.K. Westcott, Vinay K. Kartha, Manon Miller, Adam J. Schoenfeld, Isabella Del Priore, Jonathan Y. Kim, Lydia P. DeAngelo, Manyuan Liu, Arjun Bhutkar, Lindsay M. LaFave, Sai Ma, Carla P. Concepcion
Processed data for bulk RNA-seq of primary tumors isolated from KP, KPS-HET and KPS animals
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7b34017cdb6d509327a6779c56532668
https://doi.org/10.1158/2159-8290.22541084
https://doi.org/10.1158/2159-8290.22541084
Autor:
Tyler Jacks, Jason D. Buenrostro, Aviv Regev, Carla F. Kim, Charles M. Rudin, Natasha Rekhtman, Gregory J. Riely, Roderick T. Bronson, Manav Gupta, Kevin Meli, Francisco J. Sánchez-Rivera, Peter M.K. Westcott, Vinay K. Kartha, Manon Miller, Adam J. Schoenfeld, Isabella Del Priore, Jonathan Y. Kim, Lydia P. DeAngelo, Manyuan Liu, Arjun Bhutkar, Lindsay M. LaFave, Sai Ma, Carla P. Concepcion
Processed data for bulk ATAC-seq of isogenic SMARCA4-WT and -KO cell lines
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d74e81c89c1f111fdc821cff53ec855d
https://doi.org/10.1158/2159-8290.22541096.v1
https://doi.org/10.1158/2159-8290.22541096.v1
Autor:
Tyler Jacks, Jason D. Buenrostro, Aviv Regev, Carla F. Kim, Charles M. Rudin, Natasha Rekhtman, Gregory J. Riely, Roderick T. Bronson, Manav Gupta, Kevin Meli, Francisco J. Sánchez-Rivera, Peter M.K. Westcott, Vinay K. Kartha, Manon Miller, Adam J. Schoenfeld, Isabella Del Priore, Jonathan Y. Kim, Lydia P. DeAngelo, Manyuan Liu, Arjun Bhutkar, Lindsay M. LaFave, Sai Ma, Carla P. Concepcion
Mutations and copy number alterations in PDX models used in this study
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2727f2c645d5056a98ef4b1e7ac249c5
https://doi.org/10.1158/2159-8290.22541078
https://doi.org/10.1158/2159-8290.22541078
Autor:
Tyler Jacks, Jason D. Buenrostro, Aviv Regev, Carla F. Kim, Charles M. Rudin, Natasha Rekhtman, Gregory J. Riely, Roderick T. Bronson, Manav Gupta, Kevin Meli, Francisco J. Sánchez-Rivera, Peter M.K. Westcott, Vinay K. Kartha, Manon Miller, Adam J. Schoenfeld, Isabella Del Priore, Jonathan Y. Kim, Lydia P. DeAngelo, Manyuan Liu, Arjun Bhutkar, Lindsay M. LaFave, Sai Ma, Carla P. Concepcion
Processed data for bulk RNA-seq of isogenic SMARCA4-WT and -KO cell lines
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d52d8ecb56becd9d8e98ad0a4ad8581b
https://doi.org/10.1158/2159-8290.22541090
https://doi.org/10.1158/2159-8290.22541090
Autor:
Tyler Jacks, Jason D. Buenrostro, Aviv Regev, Carla F. Kim, Charles M. Rudin, Natasha Rekhtman, Gregory J. Riely, Roderick T. Bronson, Manav Gupta, Kevin Meli, Francisco J. Sánchez-Rivera, Peter M.K. Westcott, Vinay K. Kartha, Manon Miller, Adam J. Schoenfeld, Isabella Del Priore, Jonathan Y. Kim, Lydia P. DeAngelo, Manyuan Liu, Arjun Bhutkar, Lindsay M. LaFave, Sai Ma, Carla P. Concepcion
SMARCA4/BRG1 encodes for one of two mutually exclusive ATPases present in mammalian SWI/SNF chromatin remodeling complexes and is frequently mutated in human lung adenocarcinoma. However, the functional consequences of SMARCA4 mutation on tumor initi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::53c444972f838f79de09a6a762799058
https://doi.org/10.1158/2159-8290.c.6549551.v1
https://doi.org/10.1158/2159-8290.c.6549551.v1