Zobrazeno 1 - 10
of 44
pro vyhledávání: '"Jarrod Chapman"'
Autor:
Jeremy Schmutz, Kerrie Barry, Tierney L. Logan, Eli Meyer, David B. Lowry, Jarrod Chapman, Kyle M. Hernandez, Thomas E. Juenger, Daniel S. Rokhsar, Samuel H. Taylor
Publikováno v:
The New phytologist, vol 205, iss 1
The New Phytologist
The New Phytologist
The process of plant speciation often involves the evolution of divergent ecotypes in response to differences in soil water availability between habitats. While the same set of traits is frequently associated with xeric/mesic ecotype divergence, it i
Autor:
Shuji Takahashi, Yutaka Suzuki, Douglas W. Houston, Christian D. Haudenschild, Tsutomu Kinoshita, Darwin S. Dichmann, Shuuji Mawaribuchi, Masanori Taira, Jane Grimwood, Martin F. Flajnik, Yumi Izutsu, Tatsuo Michiue, Michihiko Ito, Yoko Kuroki, Yuzuru Ito, Yuko Ohta, Oleg Simakov, Ila van Kruijsbergen, Taejoon Kwon, Shengquiang Shu, Jacob O. Kitzman, Edward M. Marcotte, Adam M. Session, Yuuri Yasuoka, Sahar V. Mozaffari, Jonathan C. Stites, Jay Shendure, Minoru Watanabe, Joseph W. Carlson, Rebecca Heald, Nicholas H. Putnam, Akimasa Fukui, John B. Wallingford, Aaron M. Zorn, Kevin A. Burns, Atsushi Suzuki, Sven Heinz, Jarrod Chapman, Therese Mitros, Hajime Ogino, Georgios Georgiou, Makoto Asashima, Kamran Karimi, Uffe Hellsten, Jeremy Schmutz, Daniel S. Rokhsar, Joshua D. Fortriede, Yoshinobu Uno, Vaneet Lotay, Jerry Jenkins, Simon J. van Heeringen, Akira Hikosaka, Toshiaki Tanaka, Atsushi Toyoda, Yoshikazu Haramoto, Sarita S. Paranjpe, Chiyo Takagi, Yoichi Matsuda, Takuya Nakayama, Takamasa S. Yamamoto, Ryan Lister, Asao Fujiyama, Richard M. Harland, Ian K. Quigley, Kelly E. Miller, Louis DuPasquier, Peter D. Vize, Gert Jan C. Veenstra, Mariko Kondo, Ozren Bogdanovic, Haruki Ochi, Jessica B. Lyons, Jacques Robert, Naoto Ueno
Publikováno v:
Nature, vol 538, iss 7625
Nature, 538, 336-362
Nature, 538, pp. 336-362
Nature, 538, 336-362
Nature, 538, pp. 336-362
To explore the origins and consequences of tetraploidy in the African clawed frog, we sequenced the Xenopus laevis genome and compared it to the related diploid X. tropicalis genome. We characterize the allotetraploid origin of X. laevis by partition
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bb634b9e56d258b46c4fef0a637602ed
https://escholarship.org/uc/item/8h02q9hf
https://escholarship.org/uc/item/8h02q9hf
Autor:
Daniel S. Rokhsar, Steven Hofmeyr, Aydin Buluc, Evangelos Georganas, Chaitanya Aluru, Rob Egan, Leonid Oliker, Katherine Yelick, Jarrod Chapman
Publikováno v:
SC
De novo whole genome assembly reconstructs genomic sequences from short, overlapping, and potentially erroneous DNA segments and is one of the most important computations in modern genomics. This work presents HipMer, the first high-quality end-to-en
Autor:
Simon E. Prochnik, Chandler Fulton, Scott C. Dawson, Hank Tu, Michael J. Cipriano, Joel B. Dacks, Alan Kuo, Joel Mancuso, Shengqiang Shu, W. Zacheus Cande, Igor V. Grigoriev, Alexander R. Paredez, Lillian K. Fritz-Laylin, Susan Lucas, Mark C. Field, Erika Lindquist, Daniel S. Rokhsar, Meredith L. Carpenter, Asaf Salamov, Rochak Neupane, Harris Shapiro, Jarrod Chapman, Michael L. Ginger, Jonathan K Pham
Publikováno v:
Cell. 140(5):631-642
SummaryGenome sequences of diverse free-living protists are essential for understanding eukaryotic evolution and molecular and cell biology. The free-living amoeboflagellate Naegleria gruberi belongs to a varied and ubiquitous protist clade (Heterolo
Autor:
Philip A. Wigge, Lakshmi D. Viswanathan, Bert Hobmayer, J. Craig Venter, Catherine E. Dana, Daniel E. Martínez, Georg Hemmrich, Toshitaka Fujisawa, Simon E. Prochnik, Thomas C. G. Bosch, Anne Kathrin Gorny, Andre Franke, Willi Salvenmoser, René Augustin, Ewen F. Kirkness, Charles N. David, Xiaoming Zhang, Bianca Bertulat, Prakash G. Balasubramanian, Angelika Böttger, Chiemi Nishimiya-Fujisawa, Shiho Hayakawa, Patrick Tischler, Lydia Gee, Thomas Weinmaier, Jung Shan Hwang, Hans R. Bode, Kazuho Ikeo, Toshio Takahashi, Brian P. Walenz, Hiroshi Watanabe, Takashi Gojobori, Karin A. Remington, Yukio Nakamura, Kevin J. Peterson, Roland Aufschnaiter, Corina Guder, Benjamin M. Wheeler, Thomas Rattei, Alexander Wolf, Uffe Hellsten, Jisong Peng, Robert Steele, Jarrod Chapman, Daniel S. Rokhsar, Eisuke Hayakawa, Steven E. Hampson, Therese Mitros, Jon Borman, Sebastian Fraune, Ulrich Technau, Shengquiang Shu, Granger G. Sutton, Dana A. Busam, Patrick R. H. Steinmetz, Nadezhda Sumin, Konstantin Khalturin, Mamiko Hirose, Kathryn Disbennett, Atshushi Ogura, Marie Kristin Eder, Cynthia Pfannkoch, Dennis F. Kibler, Robert L. Strausberg, Alysha M. Heimberg, Bruce Blumberg, Lee Law, Oleg Simakov, Nicholas H. Putnam, Thomas W. Holstein, Suat Özbek, Dirk Lindgens, Takeshi Kawashima, David Goodstein
Publikováno v:
Nature. 464:592-596
The freshwater cnidarian Hydra was first described in 17021 and has been the object of study for 300 years. Experimental studies of Hydra between 1736 and 1744 culminated in the discovery of asexual reproduction of an animal by budding, the first des
Autor:
Paul G. Richardson, David A. Sela, Alla Lapidus, Neil P. J. Price, Fang Chen, T. R. Whitehead, Jaehan Kim, Jarrod Chapman, A. Adeuya, David A. Mills, Carlito B. Lebrilla, German John Bruce, Daniel S. Rokhsar
Publikováno v:
Proceedings of the National Academy of Sciences. 105:18964-18969
Following birth, the breast-fed infant gastrointestinal tract is rapidly colonized by a microbial consortium often dominated by bifidobacteria. Accordingly, the complete genome sequence of Bifidobacterium longum subsp. infantis ATCC15697 reflects a c
Autor:
Mansi Srivastava, Emina Begovic, Alan Kuo, Nicholas H. Putnam, Takeshi Kawashima, María Ángeles Moreno, Jeremy Schmutz, Therese Mitros, Harris Shapiro, Leo W. Buss, Jarrod Chapman, Uffe Hellsten, Igor V. Grigoriev, Daniel S. Rokhsar, Jane Grimwood, Stephen L. Dellaporta, Kai Kamm, Bernd Schierwater, Asaf Salamov, Meredith L. Carpenter, Ana Y. Signorovitch
Publikováno v:
Nature. 454:955-960
Placozoans are arguably the simplest free-living animals, possibly evoking an early stage in metazoan evolution, yet their biology is poorly understood. Here we report the sequencing and analysis of the {approx}98 million base pair nuclear genome of
Autor:
Charles N. David, Kazuho Ikeo, Yasuharu Takaku, Jung Shan Hwang, Jarrod Chapman, Takashi Gojobori
Publikováno v:
Molecular Biology and Evolution. 25:2009-2017
The cnidocil at the apical end of Hydra nematocytes is a mechanosensory cilium, which acts as a "trigger" for discharge of the nematocyst capsule. The cnidocil protrudes from the center of the cnidocil apparatus and is composed of singlet and doublet
Autor:
Suat Özbek, Jarrod Chapman, Thomas W. Holstein, Stephan Grzesiek, Charles N. David, Pernille Rose Jensen, Sebastian Meier
Publikováno v:
Current Biology. 17(2):173-178
SummaryProtein structures cluster into families of folds that can result from extremely different amino acid sequences [1]. Because the enormous amount of genetic information generates a limited number of protein folds [2], a particular domain struct
Autor:
John H. Willis, Jeremy Schmutz, Chenling Xu, Uffe Hellsten, Avinash Sreedasyam, Daniel S. Rokhsar, Jeong Al, Jarrod Chapman, Graham Coop, Kevin M. Wright
Across a species range, islands of stressful habitats impose similar selection pressures on isolated populations. It is as yet unclear, when populations respond to these selective pressures, the extent to which this results in convergent genetic evol
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::77f02f1cde7650457d848de10967287c
https://doi.org/10.1101/029900
https://doi.org/10.1101/029900