Zobrazeno 1 - 10
of 17
pro vyhledávání: '"Jarosław Paszek"'
Publikováno v:
Algorithms for Molecular Biology, Vol 19, Iss 1, Pp 1-20 (2024)
Abstract We present a novel problem, called MetaEC, which aims to infer gene-species assignments in a collection of partially leaf-labeled gene trees labels by minimizing the size of duplication episode clustering (EC). This problem is particularly r
Externí odkaz:
https://doaj.org/article/922f8957c5a64170bb34a2be69ef8247
Autor:
Jarosław Paszek, Paweł Górecki
Publikováno v:
BMC Genomics, Vol 19, Iss S5, Pp 71-83 (2018)
Abstract Background One of evolutionary molecular biology fundamental issues is to discover genomic duplication events and their correspondence to the species tree. Such events can be reconstructed by clustering single gene duplications inferred by r
Externí odkaz:
https://doaj.org/article/7ed31f373ac44cabb4db63715230b284
Autor:
Tomasz Gambin, Michał Startek, Krzysztof Walczak, Jarosław Paszek, Dariusz Grzebelus, Anna Gambin
Publikováno v:
Evolutionary Bioinformatics, Vol 2013, Iss 9, Pp 17-27 (2013)
Externí odkaz:
https://doaj.org/article/199062432cb242ef9b9d0221bfed9bcd
Publikováno v:
BCB
Unveiling ancient whole-genome duplications, or WGDs, in the evolutionary history of species is elementary to understand how gene families have formed over time and genomes evolved. A classic framework of WGD models for deciphering ancient species in
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::4b2526da2c84cf710df18ed45e8bbcdb
https://doi.org/10.1145/3459930.3469549
https://doi.org/10.1145/3459930.3469549
Publikováno v:
Discrete Applied Mathematics. 258:114-122
The gene duplication problem seeks a species tree that reconciles given gene trees with the minimum number of gene duplication events, called gene duplication cost. To better assess species trees inferred by the gene duplication problem we study diam
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::1f35e0ba0c4fc1f66ade025680e18fb5
https://doi.org/10.1016/j.dam.2018.11.014
https://doi.org/10.1016/j.dam.2018.11.014
Publikováno v:
Journal of computational biology : a journal of computational molecular cell biology. 28(8)
The duplication-loss-coalescence (DLC) parsimony model is invaluable for analyzing the complex scenarios of concurrent duplication loss and deep coalescence events in the evolution of gene families. However, inferring such scenarios for already moder
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fe7a662e851ec5c569fb9531cc04f07d
https://pubmed.ncbi.nlm.nih.gov/34125600
https://pubmed.ncbi.nlm.nih.gov/34125600
Publikováno v:
Computational Biology and Chemistry. 89:107260
Background The genomic duplication study is fundamental to understand the process of evolution. In evolutionary molecular biology, many approaches focus on discovering the occurrences of gene duplications and multiple gene duplication episodes and th
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3f5cbf46597c7c1386f78bf55bb48237
https://doi.org/10.1016/j.compbiolchem.2020.107260
https://doi.org/10.1016/j.compbiolchem.2020.107260
Autor:
Paweł Górecki, Jarosław Paszek
Publikováno v:
BMC Genomics
BMC Genomics, Vol 19, Iss S5, Pp 71-83 (2018)
BMC Genomics, Vol 19, Iss S5, Pp 71-83 (2018)
Background One of evolutionary molecular biology fundamental issues is to discover genomic duplication events and their correspondence to the species tree. Such events can be reconstructed by clustering single gene duplications inferred by reconcilin
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::265c28c2305803efcee3c75b20be70a8
http://europepmc.org/articles/PMC5998884
http://europepmc.org/articles/PMC5998884
Autor:
Jarosław Paszek, Paweł Górecki
Publikováno v:
Comparative Genomics ISBN: 9783319679785
RECOMB-CG
RECOMB-CG
One of evolutionary molecular biology fundamental issues is to discover genomic duplication events and their correspondence to the species tree. Such events can be reconstructed by clustering single gene duplications that are inferred by reconciling
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::eab9719a201865e64a4ea0fda84f916b
https://doi.org/10.1007/978-3-319-67979-2_6
https://doi.org/10.1007/978-3-319-67979-2_6
Publikováno v:
IEEE/ACM transactions on computational biology and bioinformatics. 14(5)
The minimizing-deep-coalescence (MDC) approach infers a median (species) tree for a given set of gene trees under the deep coalescence cost. This cost accounts for the minimum number of deep coalescences needed to reconcile a gene tree with a species
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ab8b03e2536f5af5dbf8c63074eb7949
https://pubmed.ncbi.nlm.nih.gov/26887001
https://pubmed.ncbi.nlm.nih.gov/26887001