Zobrazeno 1 - 10
of 15
pro vyhledávání: '"Jane A. Welch"'
Autor:
Daria A. Gaykalova, Elana J. Fertig, Alexander V. Favorov, Joseph A. Califano, Sarah J. Wheelan, David Sidransky, Wayne M. Koch, Zubair Khan, William H. Westra, Justin A. Bishop, Elena Stavrovskaya, Jane A. Welch, Michael Considine, Alyza M. Skaist, Bahman Afsari, Dzov A. Singman, Theresa Guo, Hildegard A. Wulf, Ludmila V. Danilova, Evgeny Izumchenko, Emily L. Flam, Dylan Z. Kelley
The script for ChIP-Seq and RNA-Seq data integration
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8d00e9a4dde630dafb93b8bed73c0617
https://doi.org/10.1158/0008-5472.22416912.v1
https://doi.org/10.1158/0008-5472.22416912.v1
Autor:
Daria A. Gaykalova, Elana J. Fertig, Alexander V. Favorov, Joseph A. Califano, Sarah J. Wheelan, David Sidransky, Wayne M. Koch, Zubair Khan, William H. Westra, Justin A. Bishop, Elena Stavrovskaya, Jane A. Welch, Michael Considine, Alyza M. Skaist, Bahman Afsari, Dzov A. Singman, Theresa Guo, Hildegard A. Wulf, Ludmila V. Danilova, Evgeny Izumchenko, Emily L. Flam, Dylan Z. Kelley
Figure S1. Experimental Figure Scheme. Figure S2. ChIP-Seq quality assessment for different samples and histone marks. Figure S3. Comparable ChIP-Seq and ChIP-qRT-PCR detection of histone enrichment for different histone marks near three reference ge
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4c38fdecf77a506e13af767c48f3f27a
https://doi.org/10.1158/0008-5472.22416918.v1
https://doi.org/10.1158/0008-5472.22416918.v1
Autor:
Daria A. Gaykalova, Elana J. Fertig, Alexander V. Favorov, Joseph A. Califano, Sarah J. Wheelan, David Sidransky, Wayne M. Koch, Zubair Khan, William H. Westra, Justin A. Bishop, Elena Stavrovskaya, Jane A. Welch, Michael Considine, Alyza M. Skaist, Bahman Afsari, Dzov A. Singman, Theresa Guo, Hildegard A. Wulf, Ludmila V. Danilova, Evgeny Izumchenko, Emily L. Flam, Dylan Z. Kelley
Description of Supplemental Materials and Methods
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::53c7523dd995bda66306c3f0875e4a43
https://doi.org/10.1158/0008-5472.22416906.v1
https://doi.org/10.1158/0008-5472.22416906.v1
Autor:
Daria A. Gaykalova, Elana J. Fertig, Alexander V. Favorov, Joseph A. Califano, Sarah J. Wheelan, David Sidransky, Wayne M. Koch, Zubair Khan, William H. Westra, Justin A. Bishop, Elena Stavrovskaya, Jane A. Welch, Michael Considine, Alyza M. Skaist, Bahman Afsari, Dzov A. Singman, Theresa Guo, Hildegard A. Wulf, Ludmila V. Danilova, Evgeny Izumchenko, Emily L. Flam, Dylan Z. Kelley
Chromatin alterations mediate mutations and gene expression changes in cancer. Chromatin immunoprecipitation followed by sequencing (ChIP-Seq) has been utilized to study genome-wide chromatin structure in human cancer cell lines, yet numerous technic
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7ba42e5ea43c69b15d2d9e4020d3ddc3
https://doi.org/10.1158/0008-5472.c.6509685.v1
https://doi.org/10.1158/0008-5472.c.6509685.v1
Autor:
Daria A. Gaykalova, Elana J. Fertig, Alexander V. Favorov, Joseph A. Califano, Sarah J. Wheelan, David Sidransky, Wayne M. Koch, Zubair Khan, William H. Westra, Justin A. Bishop, Elena Stavrovskaya, Jane A. Welch, Michael Considine, Alyza M. Skaist, Bahman Afsari, Dzov A. Singman, Theresa Guo, Hildegard A. Wulf, Ludmila V. Danilova, Evgeny Izumchenko, Emily L. Flam, Dylan Z. Kelley
Legends for supplemental figures S1-S15 and tables S1-S11
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::349fea8370e79bc78f88b69b304fdecc
https://doi.org/10.1158/0008-5472.22416921.v1
https://doi.org/10.1158/0008-5472.22416921.v1
Autor:
Daria A. Gaykalova, Elana J. Fertig, Alexander V. Favorov, Joseph A. Califano, Sarah J. Wheelan, David Sidransky, Wayne M. Koch, Zubair Khan, William H. Westra, Justin A. Bishop, Elena Stavrovskaya, Jane A. Welch, Michael Considine, Alyza M. Skaist, Bahman Afsari, Dzov A. Singman, Theresa Guo, Hildegard A. Wulf, Ludmila V. Danilova, Evgeny Izumchenko, Emily L. Flam, Dylan Z. Kelley
Table S1. Clinical data for patient-derived PDX1, PDX2, UPPP1, and UPPP2 samples used for ChIP-based analysis. Table S2. ChIP-DNA qRT-PCR primers-probe sequence Table S3. Sample-specific enrichment of H3K4me3 histone mark at 5''UTR of individual gene
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::41b46eb0b45ccbada2a18df6ef81c2d4
https://doi.org/10.1158/0008-5472.22416909.v1
https://doi.org/10.1158/0008-5472.22416909.v1
Autor:
Daria A. Gaykalova, Elana J. Fertig, Alexander V. Favorov, Joseph A. Califano, Sarah J. Wheelan, David Sidransky, Wayne M. Koch, Zubair Khan, William H. Westra, Justin A. Bishop, Elena Stavrovskaya, Jane A. Welch, Michael Considine, Alyza M. Skaist, Bahman Afsari, Dzov A. Singman, Theresa Guo, Hildegard A. Wulf, Ludmila V. Danilova, Evgeny Izumchenko, Emily L. Flam, Dylan Z. Kelley
DiffBind script
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d21b46655b98f81d86bf320a8499ff25
https://doi.org/10.1158/0008-5472.22416915.v1
https://doi.org/10.1158/0008-5472.22416915.v1
Autor:
William H. Westra, Elana J. Fertig, Zubair Khan, Evgeny Izumchenko, Dzov A. Singman, Wayne M. Koch, Hildegard A. Wulf, Justin A. Bishop, Elena D. Stavrovskaya, Bahman Afsari, Ludmila Danilova, Dylan Z. Kelley, Alexander V. Favorov, Jane A. Welch, Theresa Guo, Daria A. Gaykalova, David Sidransky, Joseph A. Califano, Michael Considine, Sarah J. Wheelan, Alyza M. Skaist, Emily Flam
Publikováno v:
Cancer research, vol 77, iss 23
Chromatin alterations mediate mutations and gene expression changes in cancer. Chromatin immunoprecipitation followed by sequencing (ChIP-Seq) has been utilized to study genome-wide chromatin structure in human cancer cell lines, yet numerous technic
Autor:
John G. Zampella, Nemanja Rodić, Toby C. Cornish, Jane A. Welch, Jef D. Boeke, Cheng Ran Lisa Huang, Kathleen H. Burns, Wan Rou Yang, Veena P. Gnanakkan
Publikováno v:
Mobile DNA
Background The National Cancer Institute-60 (NCI-60) cell lines are among the most widely used models of human cancer. They provide a platform to integrate DNA sequence information, epigenetic data, RNA and protein expression, and pharmacologic susce
Autor:
Jane E. Welch, Sarah R. Auclair, Chris S. Lantz, Dorottya K. Boisen, Bryan Saunders, Kathryn M. Ogborn, Amelia T. Tavangar, Julianne Naples, Anna Marie P. Young, Abdalla A. Sheikh, Kenneth Roth
Publikováno v:
Infection and immunity. 82(3)
The contribution of interleukin-3 (IL-3), a hematopoietic growth factor and immunoregulatory cytokine, to resistance to blood-stage malaria was investigated by infecting IL-3-deficient (knockout [KO]) mice with Plasmodium berghei NK65. Male IL-3 KO m