The Expansion of Animal MicroRNA Families Revisited

Autor: Jana Hertel, Peter F. Stadler

Publikováno v: Life, Vol 5, Iss 1, Pp 905-920 (2015)

MicroRNAs are important regulatory small RNAs in many eukaryotes. Due to their small size and simple structure, they are readily innovated de novo. Throughout the evolution of animals, the emergence of novel microRNA families traces key morphological

Externí odkaz: https://doaj.org/article/618ec89233e246f2a1cb767059b76699

Evolution of Fungal U3 snoRNAs: Structural Variation and Introns

Autor: Sebastian Canzler, Peter F. Stadler, Jana Hertel

Publikováno v: Non-Coding RNA, Vol 3, Iss 1, p 3 (2017)

The U3 small nucleolar RNA (snoRNA) is an essential player in the initial steps of ribosomal RNA biogenesis which is ubiquitously present in Eukarya. It is exceptional among the small nucleolar RNAs in its size, the presence of multiple conserved seq

Externí odkaz: https://doaj.org/article/b8043e058e794b838233ca1c20733583

Third Report on Chicken Genes and Chromosomes 2015

Autor: Thomas Haaf, Christopher M. Ashwell, Qing Wang, Craig A. Smith, Michael E. Persia, Harry Noyes, Stefan A. Muljo, David W. Burt, Parker B. Antin, Huaijun Zhou, Martien A. M. Groenen, Anne Nitsche, Darren K. Griffin, Jonathan Wood, Darek Kedra, Paul Flicek, Sheila C. Ommeh, Denis M. Larkin, Raman Akinyanju Lawal, Mary E. Delany, Bronwen Aken, David P. Froman, Kerstin Howe, Richard P. M. A. Crooijmans, Tammy E. Steeves, Wesley C. Warren, Akira Motegi, Michael S. Neuberger, Andrea Münsterberg, Heather McCormack, Liang Sun, Matthew Dunn, Helio Pais, Jacqueline Smith, Cedric Notredame, Almas Gheyas, Alisa Sophia Schneider, Olivier Hanotte, Pablo Prieto Barja, Elizabeth A. O'Hare, Richard V. N. Davis, Pierre-François Roux, Katie E. Fowler, Rishi Nag, Likit Preeyanon, Mario Fasold, Thomas Derrien, Frédérique Pitel, Marta Farré, Alan Hart, Kalmia E. Kniel, Lel Eory, Joana Damas, Max F. Rothschild, Susan J. Lamont, Perry J. Blackshear, Damarius S. Fleming, Julien Häsler, Peter K. Kaiser, Stephen J. Kemp, Alan Archibald, S. Blair Hedges, Sandrine Lagarrigue, Igor Ulitsky, C. Titus Brown, Michael Schmid, Peter F. Stadler, Dirk-Jan de Koning, Fiona M. McCarthy, Valerie Garceau, Hans Ellegren, David A. Hume, Carl J. Schmidt, Richard Kuo, Takele T Desta, Douglas D. Rhoads, Clarissa Boschiero, Marla C. McPherson, Shane C. Burgess, Claus Steinlein, Andrew J. Oler, Paul P. Gardner, William Chow, Charmaine M. Robinson, Elizabeth M. Pritchett, Christophe Klopp, Michael N Romanov, I. Nanda, Ian C. Dunn, Sarah M. Markland, Steve Searle, David Wragg, Jana Hertel, Allen Hubbard, Ying Wang, Rebecca E. O’Connor, Michael A. Skinner, Ionas Erb, Laure Fresard, Minoru Takata, Hans H. Cheng, Derrick Coble, Matthew G. Schwartz, Amanda M. Cooksey

Publikováno v: ResearcherID
Cytogenetic and Genome Research 145 (2015) 2
Cytogenetic and Genome Research, 145(2), 78-179
Schmid, M, Smith, J, Burt, D W, Aken, B L, Antin, P B, Archibald, A L, Ashwell, C, Blackshear, P J, Boschiero, C, Brown, C T, Burgess, S C, Cheng, H H, Chow, W, Coble, D J, Cooksey, A, Crooijmans, R P M A, Damas, J, Davis, R V N, De Koning, D, Delany, M E, Derrien, T, Desta, T T, Dunn, I C, Dunn, M, Ellegren, H, Eory, L, Erb, I, Farre, M, Fasold, M, Fleming, D, Flicek, P, Fowler, K E, Fresard, L, Froman, D P, Garceau, V, Gardner, P P, Gheyas, A A, Griffin, D K, Groenen, M A M, Haaf, T, Hanotte, O, Hart, A, Hasler, J, Hedges, S B, Hertel, J, Howe, K, Hubbard, A, Hume, D A, Kaiser, P, Kedra, D, Kemp, S, Klopp, C, Kniel, K E, Kuo, R, Lagarrigue, S, Lamont, S J, Larkin, D M, Lawal, R A, Markland, S M, Mccarthy, F, Mccormack, H A, Mcpherson, M C, Motegi, A, Muljo, S A, Munsterberg, A, Nag, R, Nanda, I, Neuberger, M, Nitsche, A, Notredame, C, Noyes, H, O''connor, R, O''hare, E A, Oler, A J, Ommeh, S C, Pais, H, Persia, M, Pitel, F, Preeyanon, L, Prieto Barja, P, Pritchett, E M, Rhoads, D D, Robinson, C M, Romanov, M N, Rothschild, M, Roux, P, Schmidt, C J, Schneider, A, Schwartz, M, Searle, S M, Skinner, M A, Smith, C A, Stadler, P F, Steeves, T E, Steinlein, C, Sun, L, Takata, M, Ulitsky, I, Wang, Q, Wang, Y, Warren, W C, Wood, J M D, Wragg, D & Zhou, H 2015, ' Third Report on Chicken Genes and Chromosomes 2015 ', Cytogenetic and Genome Research, vol. 145, no. 2, pp. 78-179 . https://doi.org/10.1159/000430927

It is now over 10 years since the first avian genome [International Chicken Genome Sequencing Consortium, 2004] and the first complete avian karyotype [Masabanda et al., 2004] were both published; however, until 2014, avian cytogenetics has focused h

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::693d9318813ed702a544f91eec58bc14
https://doi.org/10.1159/000430927

Phylogenetic distribution of plant snoRNA families

Autor: Deblina, Patra Bhattacharya, Sebastian, Canzler, Stephanie, Kehr, Jana, Hertel, Ivo, Grosse, Peter F, Stadler

Publikováno v: BMC Genomics

Background Small nucleolar RNAs (snoRNAs) are one of the most ancient families amongst non-protein-coding RNAs. They are ubiquitous in Archaea and Eukarya but absent in bacteria. Their main function is to target chemical modifications of ribosomal RN

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::d42c29f2b698afa4769f88a68bf97efb
https://pubmed.ncbi.nlm.nih.gov/27881081

An updated human snoRNAome

Autor: Dominik J. Jedlinski, Rafal Gumienny, Stephanie Kehr, Peter F. Stadler, Mihaela Zavolan, Jana Hertel, Hadi Jorjani, Andreas Gruber

Publikováno v: Nucleic Acids Research

Small nucleolar RNAs (snoRNAs) are a class of non-coding RNAs that guide the post-transcriptional processing of other non-coding RNAs (mostly ribosomal RNAs), but have also been implicated in processes ranging from microRNA-dependent gene silencing t

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3d7bba96ad92ea71163e5b3b46766756