Phylodynamic modelling of bacterial outbreaks using nanopore sequencing

Autor: Sebastián Duchêne, Simon Smith, Mition Yoannes, Jan G. Jaworski, Paul F. Horwood, Clive Wurr, Moses Laman, Steven Y. C. Tong, Laurens Manning, Rebecca Ford, Jimmy Drekore, Eike J. Steinig, Andrew R. Greenhill, William Pomat, Harry Poka, Cadhla Firth, Emma S. McBryde, David Nangen, Lachlan J. M. Coin, Izzard Aglua, Bohu Urakoko, Eri Ebos

Nanopore sequencing and phylodynamic modelling have been used to reconstruct the transmission dynamics of viral epidemics, but their application to bacterial pathogens has remained challenging. Here, we implement Random Forest models for single nucle

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::987d614247165f67768359bd7514e216
https://doi.org/10.1101/2021.04.30.442218

Quantification and Discovery of Acyl-ACPs by LC-MS/MS

Autor: Jia Li, Jeong-Won Nam, Douglas K. Allen, Jan G. Jaworski, Lauren M Jenkins, Bradley S. Evans

Acyl carrier proteins (ACPs) are the scaffolds for fatty acid biosynthesis in living systems, rendering them essential to a comprehensive understanding of lipid metabolism; however, accurate quantitative methods to assess individual acyl-ACPs do not

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f3e0b69eaa5526d6c05c3d96717d7bc0

Review of the algal biology program within the National Alliance for Advanced Biofuels and Bioproducts

Autor: Richard T. Sayre, Matteo Pellegrini, José A. Olivares, Ian K. Blaby, Jan G. Jaworski, Timothy P. Devarenne, Daniel B. Anderson, Shawn R. Starkenburg, James W. Richardson, Judith K. Brown, Martin Sabarsky, Clifford J. Unkefer, Jon K. Magnuson, Jonathan E. Holladay, István Molnár, Pat J. Unkefer, Taraka Dale, C. Meghan Downes, Ellen A. Panisko, John B. Mott, Ivan Baxter, Ursula Goodenough, Margaret McCormick, David T. Fox, Kimberly L. Ogden, Michael Carleton, Scott N. Twary, Andrew T. Koppisch, Gary D. Stormo, Susan K. Dutcher, David Kramer, Munehiro Teshima, Mary S. Lipton, Rose Ann Cattolico, Joshua S. Yuan, Babetta L. Marrone, Juergen E. W. Polle

Publikováno v: Unkefer, C J, Sayre, R T, Magnuson, J K, Anderson, D B, Baxter, I, Blaby, I K, Brown, J K, Carleton, M, Cattolico, R A, Dale, T, Devarenne, T P, Downes, C M, Dutcher, S K, Fox, D T, Goodenough, U, Jaworski, J, Holladay, J E, Kramer, D M, Koppisch, A T, Lipton, M S, Marrone, B L, McCormick, M, Molnár, I, Mott, J B, Ogden, K L, Panisko, E A, Pellegrini, M, Polle, J, Richardson, J W, Sabarsky, M, Starkenburg, S R, Stormo, G D, Teshima, M, Twary, S N, Unkefer, P J, Yuan, J S & Olivares, J A 2017, ' Review of the algal biology program within the National Alliance for Advanced Biofuels and Bioproducts ', Algal Research, vol. 22, pp. 187-215 . https://doi.org/10.1016/j.algal.2016.06.002

In 2010, when the National Alliance for Advanced Biofuels and Bioproducts (NAABB) consortium began, little was known about the molecular basis of algal biomass or oil production. Very few algal genome sequences were available and efforts to identify

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4d4c81271409c53605ec01cf26f1e535
https://escholarship.org/uc/item/9wf7q7md

Patatin-Related Phospholipase pPLAIIIδ Increases Seed Oil Content with Long-Chain Fatty Acids in Arabidopsis

Autor: Maoyin Li, Tien Phan, Xuemin Wang, Jan G. Jaworski, Michael Ortiz, Sung Chul Bahn, Jia Li, Ruth Welti, Mary R. Roth, Chuchuan Fan

Publikováno v: Plant Physiology. 162:39-51

The release of fatty acids from membrane lipids has been implicated in various metabolic and physiological processes, but in many cases, the enzymes involved and their functions in plants remain unclear. Patatin-related phospholipase As (pPLAs) const

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5e2393a83abdff5f353d73b20b71d3d7
https://doi.org/10.1104/pp.113.216994

Sphingolipids in the Root Play an Important Role in Regulating the Leaf Ionome in Arabidopsis thaliana

Autor: Edgar B. Cahoon, Teresa M. Dunn, Ivan Baxter, Charles R. Dietrich, Joe Morrissey, Mary Lou Guerinot, Gongshe Han, David E. Salt, Shiyou Lü, Jan G. Jaworski, Jonathan E. Markham, Ming Chen, Kenneth Gable, Sita D. Gupta, Jeffrey M. Harmon, Dai-Yin Chao, Brett Lahner

Publikováno v: The Plant Cell. 23:1061-1081

Sphingolipid synthesis is initiated by condensation of Ser with palmitoyl-CoA producing 3-ketodihydrosphinganine (3-KDS), which is reduced by a 3-KDS reductase to dihydrosphinganine. Ser palmitoyltransferase is essential for plant viability. Arabidop

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3b7adc718996eb1e9db6c00a91f8af61
https://doi.org/10.1105/tpc.110.079095