Zobrazeno 1 - 10
of 392
pro vyhledávání: '"Jan Fang Cheng"'
Autor:
Nicolas Grosjean, Estella F. Yee, Desigan Kumaran, Kriti Chopra, Macon Abernathy, Sandeep Biswas, James Byrnes, Dale F. Kreitler, Jan-Fang Cheng, Agnidipta Ghosh, Steven C. Almo, Masakazu Iwai, Krishna K. Niyogi, Himadri B. Pakrasi, Ritimukta Sarangi, Hubertus van Dam, Lin Yang, Ian K. Blaby, Crysten E. Blaby-Haas
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-18 (2024)
Abstract Heme has a critical role in the chemical framework of the cell as an essential protein cofactor and signaling molecule that controls diverse processes and molecular interactions. Using a phylogenomics-based approach and complementary structu
Externí odkaz:
https://doaj.org/article/eaa9432c18444e92ae265f34950f8b4c
Autor:
Jonathan K. Covington, Nicole Torosian, Allison M. Cook, Marike Palmer, Scott G. Bryan, Nancy O. Nou, Ritesh Mewalal, Miranda Harmon-Smith, Ian K. Blaby, Jan-Fang Cheng, Matthias Hess, Phillip J. Brumm, Nitin K. Singh, Kasthuri Venkateswaran, Brian P. Hedlund
Publikováno v:
Frontiers in Microbiology, Vol 15 (2024)
The aerobic hyperthermophile “Fervidibacter sacchari” catabolizes diverse polysaccharides and is the only cultivated member of the class “Fervidibacteria” within the phylum Armatimonadota. It encodes 117 putative glycoside hydrolases (GHs), i
Externí odkaz:
https://doaj.org/article/c9d177b4cfd84087b9adf9873a6ee38e
Autor:
Mária Džunková, James J. La Clair, Tomáš Tyml, Devin Doud, Frederik Schulz, Samuel Piquer-Esteban, Dafne Porcel Sanchis, Andrew Osborn, David Robinson, Katherine B. Louie, Ben P. Bowen, Robert M. Bowers, Janey Lee, Vicente Arnau, Wladimiro Díaz-Villanueva, Ramunas Stepanauskas, Terrence Gosliner, Shailesh V. Date, Trent R. Northen, Jan-Fang Cheng, Michael D. Burkart, Tanja Woyke
Publikováno v:
Microbiome, Vol 11, Iss 1, Pp 1-24 (2023)
Abstract Background Nudibranchs comprise a group of > 6000 marine soft-bodied mollusk species known to use secondary metabolites (natural products) for chemical defense. The full diversity of these metabolites and whether symbiotic microbes are respo
Externí odkaz:
https://doaj.org/article/d885a6b36ed6498aa727710bc46feac4
Autor:
Liu Chia-Wei, Jan-Fang Cheng, Kwong-Chung Tung, Yu-Kai Hong, Jyun-Hong Lin, Yu-Hui Lin, Che-An Tsai, Shih-Ping Lin, Yung-Chun Chen, Zhi-Yuan Shi, Yao-Ting Huang, Po-Yu Liu
Publikováno v:
Journal of Microbiology, Immunology and Infection, Vol 55, Iss 6, Pp 1195-1202 (2022)
Objective: Shewanella algae is a zoonotic marine bacterium that causes a variety of infections in immunocompromised patients or those who have been exposed to seawater. The development of trimethoprim/sulfamethoxazole (TMP/SMX) resistance in S. algae
Externí odkaz:
https://doaj.org/article/a054d974ab424d8c91e169d9416299de
Publikováno v:
Frontiers in Bioengineering and Biotechnology, Vol 11 (2023)
High-throughput genetic screening is frequently employed to rapidly associate gene with phenotype and establish sequence-function relationships. With the advent of CRISPR technology, and the ability to functionally interrogate previously genetically
Externí odkaz:
https://doaj.org/article/ca84804743014dd5b3c9f2228d1d84f1
Publikováno v:
STAR Protocols, Vol 3, Iss 3, Pp 101546- (2022)
Summary: Our recent development of the CRAGE (chassis-independent recombinase-assisted genome engineering) system enables single-step integration of large, complex DNA constructs directly into bacteria genomes across multiple phyla. This protocol des
Externí odkaz:
https://doaj.org/article/d1fc9ba746b846139378c42e577517a7
Autor:
Chien-Hao Tseng, Jan-Fang Cheng, Shi-Yu Chen, Wen-Huei Chen, Zhi-Yuan Shi, Yu-Hui Lin, Che-An Tsai, Shih-Ping Lin, Yung-Chun Chen, Yu-Chia Lin, Yao-Ting Huang, Po-Yu Liu
Publikováno v:
Journal of Microbiology, Immunology and Infection, Vol 54, Iss 4, Pp 658-664 (2021)
Background: Shewanella algae is a zoonotic pathogen that poses a serious health threat to immunocompromised hosts. Treatment of S. algae infections is challenging due to the pathogen's intrinsic resistance to a variety of β-lactam antibiotics. Thera
Externí odkaz:
https://doaj.org/article/768313a013c848ff9432f354fc74eec6
Autor:
Doina Ciobanu, Sandy Chan, Steven Ahrendt, C. Alisha Quandt, Gerald L. Benny, Matthew E. Smith, Timothy Y. James, Jan-Fang Cheng
Publikováno v:
STAR Protocols, Vol 3, Iss 1, Pp 100968- (2022)
Summary: We describe environmental microbial eukaryotes (EMEs) sample collection, single-cell isolation, lysis, and genome amplification, followed by the rDNA amplification and OTU screening for recovery of high-quality species-specific genomes for d
Externí odkaz:
https://doaj.org/article/449e8ef6abab4115a5fccbcfb9fca8b6
Autor:
Covington, Jonathan K., Torosian, Nicole, Cook, Allison M., Palmer, Marike, Bryan, Scott G., Nou, Nancy O., Mewalal, Ritesh, Harmon-Smith, Miranda, Blaby, Ian K., Jan-Fang Cheng, Hess, Matthias, Brumm, Phillip J., Singh, Nitin K., Venkateswaran, Kasthuri, Hedlund, Brian P.
Publikováno v:
Frontiers in Microbiology; 2024, p1-11, 11p
Autor:
Doina Ciobanu, Alicia Clum, Steven Ahrendt, William B. Andreopoulos, Asaf Salamov, Sandy Chan, C. Alisha Quandt, Brian Foster, Jan P. Meier-Kolthoff, Yung Tsu Tang, Patrick Schwientek, Gerald L. Benny, Matthew E. Smith, Diane Bauer, Shweta Deshpande, Kerrie Barry, Alex Copeland, Steven W. Singer, Tanja Woyke, Igor V. Grigoriev, Timothy Y. James, Jan-Fang Cheng
Publikováno v:
iScience, Vol 24, Iss 4, Pp 102290- (2021)
Summary: Single-cell sequencing of environmental microorganisms is an essential component of the microbial ecology toolkit. However, large-scale targeted single-cell sequencing for the whole-genome recovery of uncultivated eukaryotes is lagging. The
Externí odkaz:
https://doaj.org/article/506f8b6c69dd41728994c0947e3f3bf7