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of 24
pro vyhledávání: '"Jan Byška"'
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 18, Iss , Pp 532-547 (2020)
N-terminal acetyltransferases (NATs) belong to the superfamily of acetyltransferases. They are enzymes catalysing the transfer of an acetyl group from acetyl coenzyme A to the N-terminus of polypeptide chains. N-terminal acetylation is one of the mos
Externí odkaz:
https://doaj.org/article/c0bab6a947cb4e70817490881c617cf5
Autor:
Katarína Furmanová, Jan Byška, Eduard M. Gröller, Ivan Viola, Jan J. Paleček, Barbora Kozlíková
Publikováno v:
BMC Bioinformatics, Vol 19, Iss 1, Pp 1-17 (2018)
Abstract Background Studying the patterns of protein-protein interactions (PPIs) is fundamental for understanding the structure and function of protein complexes. The exploration of the vast space of possible mutual configurations of interacting prot
Externí odkaz:
https://doaj.org/article/1313da42c8184e1cbb49ce6ddf24bd2e
Autor:
David Kuťák, Pere‐Pau Vázquez, Tobias Isenberg, Michael Krone, Marc Baaden, Jan Byška, Barbora Kozlíková, Haichao Miao
Publikováno v:
Computer Graphics Forum
Computer Graphics Forum, In press, ⟨10.1111/cgf.14738⟩
Computer Graphics Forum, In press, ⟨10.1111/cgf.14738⟩
Visualization plays a crucial role in molecular and structural biology. It has been successfully applied to a variety of tasks, including structural analysis and interactive drug design. While some of the challenges in this area can be overcome with
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2166feacf21bc81bc48c72cf761740cf
https://hdl.handle.net/2117/385817
https://hdl.handle.net/2117/385817
Publikováno v:
Computers & Graphics. 98:280-292
Educational videos are traditional means of communicating scientific findings to a broader audience. Nowadays, they are also a very common medium in distant teaching. However, creating videos using the existing software tools can be very challenging
Publikováno v:
Computers & graphics
When studying the function of proteins, biochemists utilize normal mode decomposition to enable the analysis of structural changes on time scales that are too long for molecular dynamics simulation. Such a decomposition yields a high-dimensional para
Autor:
Ondřej Vávra, Barbora Kozlíková, Vojtěch Vonásek, Jiří Damborský, Jan Byška, David Bednář, Katarína Furmanová
Publikováno v:
Computer Graphics Forum. 39:452-464
Computation of trajectories for ligand binding and unbinding via protein tunnels and channels is important for predicting possible protein-ligand interactions. These highly complex processes can be simulated by several software tools, which provide b
Autor:
Pavol Ulbrich, Katarína Furmanová, Joan Planas-Iglesias, Jan Byška, David Bednar, Gaspar Pinto, Filip Opaleny, Barbora Kozlíková
Publikováno v:
IEEE transactions on visualization and computer graphics.
In the process of understanding and redesigning the function of proteins in modern biochemistry, protein engineers are increasingly focusing on the exploration of regions in proteins called loops. Analyzing various characteristics of these regions he
Autor:
Jiří Damborský, Barbora Kozlíková, Thomas Trautner, Jan Byška, Manuela Waldner, Sérgio M. Marques
Publikováno v:
Computer Graphics Forum. 38:441-453
Analyzing molecular dynamics (MD) simulations is a key aspect to understand protein dynamics and function. With increasing computational power, it is now possible to generate very long and complex simulations, which are cumbersome to explore using tr
Autor:
Axel J. Soto, Ignacio Ponzoni, Jan Mican, María Luján Ganuza, Barbora Kozlíková, Pavol Ulbrich, Matías Nicolás Selzer, María Virginia Sabando, Jan Byška
Publikováno v:
CONICET Digital (CONICET)
Consejo Nacional de Investigaciones Científicas y Técnicas
instacron:CONICET
Consejo Nacional de Investigaciones Científicas y Técnicas
instacron:CONICET
In the modern drug discovery process, medicinal chemists deal with the complexity of analysis of large ensembles of candidate molecules. Computational tools, such as dimensionality reduction (DR) and classification, are commonly used to efficiently p
Autor:
Barbora Kozlíková, Kahin Akram Hassan, Renata Georgia Raidou, Jan Byška, Michaela Knazkova, Jiri Chmelik, Zoltan Oremus
Publikováno v:
PacificVis
Monitoring conditions in the periglacial areas of Antarctica helps geographers and geologists to understand physical processes associated with mesoscale land systems. Analyzing these unique temporal datasets poses a significant challenge for domain e